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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:16:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3 from patent US 7723110.
GX266207.1:1494-1519
AAGAGATTGACTTGATGCAGTGCTCTGTTT1494TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 3 from patent US 8053237.
GY509922.1:1494-1519
AAGAGATTGACTTGATGCAGTGCTCTGTTT1494TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 9430 from patent US 10766935.
MV652825.1:1101-1126
AAGAGATTGACTTGATGCAGTGCTCTGTTT1101TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Sequence 9430 from patent US 11566053.
OS276304.1:1101-1126
AAGAGATTGACTTGATGCAGTGCTCTGTTT1101TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT982476.1:286-311
AAGAGATTGACTTGATGCAGTGCTTTGTTT286TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU397127.1:151-176
AAGAGATTGACTTGATGCAGTGCTCTGTTT151TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTTAAGTGAATAATTCTATAG
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU398070.1:643-668
AAGAGATTGACTTGATGCAGTGCTCTGTTT643TGTCTCGTGGTAGTGATGTCAGTGGTT
Eucalyptus gunnii EST from cold-acclimated leaves (from plantlets in controlled conditions and trees in field trials).
CU400617.1:523-548
AAGAGATTGACTTGATGCAGTGCTCTGTTT523TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTTAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000177D09, 3'-EST.
FY825859.1:123-148
AAGAGATTGACTTGATGCAGTGCTCTGTTT123TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000177E09, 3'-EST.
FY825872.1:92-117
AAGAGATTGACTTGATGCAGTGCTCTGTTT92TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000224F07, 3'-EST.
FY828915.1:325-350
AAGAGATTGACTTGATGCAGTGCTCTGTTT325TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG
Eucalyptus camaldulensis mRNA, clone: Stem_001_000301E02, 3'-EST.
FY834373.1:65-90
GAAGAGATTGACTTGATGCAGTGCTCTGTT65TGTCTCGTGGTAGTGATGTCAGTGGTTTTCTTATTGTGAAGTGAATAATTCTATAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCACTGACATCACTACCACGAGACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCACTGACATCACTACCACGAGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.168 | search_plus_done; http://172.18.8.135:50400/match?q=ACCACTGACATCACTACCACGAGACA&k=0&no_gap=0&offset=0&limit=50
0.803 | 0.626 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCTCGTGGTAGTGATGTCAGTGGT&k=0&no_gap=0&offset=0&limit=50
0.812 | 0.008 | cgi_end;

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