GGGenome | Results

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2025-04-13 09:30:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Pyrus x bretschneideri Unigene58093_XinShao mRNA sequence.
JR646891.1:79-98

CCTGCCTGTAAGTAAGGCTTGGCCCATAAC79ACCAGGTTAAAGGAGTCGGGGGTTCCAGAGTGACTCAATGGTTCTCTCCC

Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18704130-18704149

AAAATACAGATATTCGGTTTTACCCATAAC18704130ACCAGGTTAAAGGAGTCGGGGGTTCCAGAGTGACTCAATGGTTCTCTCCC

Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:736381089-736381108

TTGATAGACTGTTTCATTGGAGAGGATTCT736381089CCCGACTCCTTTAACCTGGTACTTTTTATTTATTCTGGTTCTGATAATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.140 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAGGTTAAAGGAGTCGGG&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=CCCGACTCCTTTAACCTGGT&k=0&no_gap=0&offset=0&limit=48
0.183 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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