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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:09:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ovis canadensis canadensis isolate 43U chromosome 20 sequence.
CP011905.1:2543107-2543126
CAAAAAGATACATGTACAGCTGCACTATTC2543107ACCATAGCCAAAACAAGGAAAAAACCTAAATGCCCATCAACAGATGAATA
Bos taurus genome assembly, chromosome: 23.
LR962754.1:2456481-2456500
CAACAAGATACATGTACAGCTGCACTTTTC2456481ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAATA
Bos taurus genome assembly, chromosome: 23.
LR962879.1:3589928-3589947
CAACAAGATACATGTACAGCTGCACTTTTC3589928ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAATA
Cervus elaphus genome assembly, chromosome: 7.
OU343084.1:4045657-4045676
TGCACCTAAATGTTCACAGCTGCACTACTC4045657ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAGTA
Bos gaurus x Bos taurus genome assembly, chromosome: 23.
OX258977.1:3589566-3589585
CAACAAGATACATGTACAGCTGCACTTTTC3589566ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAATA
Bos taurus strain mammals genome assembly, chromosome: 23.
OX344712.1:3790288-3790307
CAACAAGATACATGTACAGCTGCACTTTTC3790288ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAATA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 28.
OX459964.2:6656606-6656625
TGCACCTAAATGTTCACAGCTGCACTATTC6656606ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAGTA
Bos taurus genome assembly, chromosome: Bta23.
OY997251.1:3787969-3787988
CAACAAGATACATGTACAGCTGCACTTTTC3787969ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAATA
Muntiacus reevesi genome assembly, chromosome: 20.
OZ005644.1:4760426-4760445
TGCACCTAAATGTTCACAGCTGCACTATTC4760426ACCATAGCCAAAACAAGGAAAAAACCTAAATGTCCATCAACAGATGAGTA
Gossypioides kirkii chromosome KI_01.
CP032244.1:573735-573754
ATTTACCTGGGTTTCGGATTCAAGCAGAGC573735ACCATAGCCAAAACAAGGAAATGAATATGGCAAACATAATAAATGCGGAC
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:616060-616079
ATTTACCTGGGTTTCAGATTCAAGCAAAGC616060ACCATAGCCAAAACAAGGAAATGAATATGGCAAACATGATAAATGCGGAC
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:594870-594889
ATTTACCTGGGTTTCAGATTCAAGCAAAGC594870ACCATAGCCAAAACAAGGAAATGAATATGGCAAACATAATAAATGTGGAC
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:905660-905679
ATTTACCTGGGTTTCGGATTCAAGCAAAGC905660ACCATAGCCAAAACAAGGAAATGAATATGGCAAACATAATAAATGTGGAC
Leptura quadrifasciata genome assembly, chromosome: 7.
OY776679.1:50785435-50785454
CACTGGTTAACTACCTACAGGCAAAAAAAA50785435ACCATAGCCAAAACAAGGAAAATACACAGATCAAAGAAAAAAGAAGGATT
Dasysyrphus tricinctus genome assembly, chromosome: 2.
OY992531.1:20944753-20944772
CACTACCTCGTTGTAGCTACGGATATCCAG20944753ACCATAGCCAAAACAAGGAAATACTGTGAAGAAGTTCGATGTCTGACGGC
Dasysyrphus tricinctus genome assembly, chromosome: 2.
OY992531.1:20975633-20975652
CACTACCTCGTTGTAGCTACGGATATCCAG20975633ACCATAGCCAAAACAAGGAAATACTGTGAAGAAGTTCGACGTTGGACGGC
Dasysyrphus tricinctus genome assembly, chromosome: 4.
OY992533.1:55553890-55553909
TAGCCAATGTATAGTGCTACCGATATCTAA55553890ACCATAGCCAAAACAAGGAAATACTGTGAGCAAGAAATCGCCAGGTCCTT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 27.
OX596111.1:47658018-47658037
TACTCATCTGTTGATGGACATTTAGGTTTT47658018TTCCTTGTTTTGGCTATGGTGAATAGTGCAGCTGTGAACATTTAGGTGCA
GA__Ed0050E08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0050E08f, mRNA sequence.
BQ402607.1:566-585
GTCCACATTTATTATGTTTGCCATATTAAT566TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCAGGTAAAT
CM044C01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR456385.1:141-160
GTCCGCATTTATCATGTTTGCCATATTCAT141TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCACGTAAAT
UFL_257_32 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES817183.1:100-119
GTCCGCATTTATCATGTTTGCCATATTCAT100TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCACGTAAAT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:125482958-125482977
GTCCACATTTATTATGTTTGCCATATTCAT125482958TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCAGGTAAAT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:125486695-125486714
GTCCACATTTATTATGTTTGCCATATTCAT125486695TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCAGGTAAAT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:199254739-199254758
GTCCGCATTTATTATGTTTGCCATATTCAT199254739TTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCCGAAACCCAGATAAAT
Sambucus nigra genome assembly, chromosome: 18.
OX422224.1:184600807-184600826
GCAGGACGAATCGATTTGGTTCTGCAGAAA184600807TTCCTTGTTTTGGCTATGGTGTTTTAAACTCCAATTTTCTCCCTAAACCC
Chryseobacterium manosquense strain Marseille-Q2069 chromosome.
CP060203.1:2616121-2616140
TTCTGAAACACCTACAAAAATATATTCTTC2616121TTCCTTGTTTTGGCTATGGTCTTTGATGGTCACTTTTCGGTTCACCGTCA
Dasysyrphus albostriatus genome assembly, chromosome: 2.
OX276336.1:52127774-52127793
CACCAGTCCCACATCGATCTTCCTCAGAGT52127774TTCCTTGTTTTGGCTATGGTCGGGATCGGGGTATCCGGTCCCAATCAATG
Tortricodes alternella genome assembly, chromosome: 13.
OX401981.1:12192419-12192438
ATCGATCAGTTTCACTTTCGTTCGCGAATG12192419TTCCTTGTTTTGGCTATGGTCCAATACTTGTTCCCAAGCACTTAGCAATG
Musotima nitidalis genome assembly, chromosome: 10.
OX421423.1:18843619-18843638
ATTTAAGAATTTTGCTGGGGATTCCTTGTT18843619TTCCTTGTTTTGGCTATGGTATTCTTGTTTTTCAATTCGGCAGAGTCTTT
Dasysyrphus tricinctus genome assembly, chromosome: 3.
OY992532.1:88712850-88712869
GCCGTCCGACGTCGAACTTCCTGACAGTAT88712850TTCCTTGTTTTGGCTATGGTCTGGATATCCGTAGCATTACCTTGGCTACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCATAGCCAAAACAAGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCATAGCCAAAACAAGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.276 | 0.267 | search_plus_done; http://172.18.8.135:50400/match?q=ACCATAGCCAAAACAAGGAA&k=0&no_gap=0&offset=0&limit=50
0.506 | 0.230 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCTTGTTTTGGCTATGGT&k=0&no_gap=0&offset=0&limit=33
0.514 | 0.009 | cgi_end;

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