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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 16:04:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Melanostigma gelatinosum genome assembly, chromosome: 5.
OX456502.1:20064435-20064454
TAACCTAACTGAACATCTACAAGGTCCTGA20064435ACCATTTCCACAACCTCAGCCGCGTTACCTAGAAACCAGTCATGTCATTA
Glycine max cultivar Williams 82 chromosome 14.
CP126439.1:24724841-24724860
TAACAGGGTGAACCGCCAAGCAATTCTGGT24724841ACCATTTCCACAACCTCAGCATATCCAACAACAACAACAACAACAACAAC
Sequence 7 from Patent WO2004074440.
CQ868542.1:3-22
AT3GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCCTGTTA
Sequence 7 from patent US 7589256.
GP573632.1:3-22
AT3GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCCTGTTA
Sequence 61968 from patent US 7569389.
GP694201.1:226-245
GTTGTTGTTGTTGTTGTTGTTGTTGGATAT226GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCCTGTTA
Sequence 55679 from patent US 9012723.
HK619333.1:442-461
GTTGTTGTTGTTGTTGTTGTTGTTGGATAT442GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGGGGGGCCCGGTA
MAG: Limnospira indica BM01 chromosome.
CP060212.1:5256966-5256985
GAGGAGATTATGGAAGGAATGAAGCTTCTG5256966GCTGAGGTTGTGGAAATGGTTTATAGAAAGGCTATGTTAGCGGTTTAATT
sf20g11.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-573 5', mRNA sequence.
AW234929.1:208-227
GTTGTTGTTGTTGTTGTTGTTGTTGGATAT208GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCCTGTTA
a10g05 cDNA Peking library 2D SCN3 Glycine max cDNA clone a10g05 5', mRNA sequence.
BM108239.1:270-289
GTTGTTGTTGTTGTTGTTGTTGTTGGATAT270GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCTGTTAA
sam02g05.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-4522 5' similar to TR:Q9ZS51 Q9ZS51 PEROXISOMAL MEMBRANE PROTEIN, mRNA sequence.
BM885587.1:192-211
GTTGTTGTTGTTGTTGTTGTTGTTGGATAT192GCTGAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGGTTCACCCTGTTA
Arthrospira platensis C1 chromosome, complete genome.
CP019998.1:992941-992960
GAGGAGATTATGGAAGGAATGAAGCTTCTG992941GCTGAGGTTGTGGAAATGGTTTATAGAAAGGCTATGTTAGCGGTTTAATT
Arthrospira sp. TJSD092 chromosome, complete genome.
CP028914.1:344455-344474
GAGGAGATTATGGAAGGAATGAAGCTTCTG344455GCTGAGGTTGTGGAAATGGTTTATAGAAAGGCTATGTTAGCGGTTTAATT
Limnospira fusiformis SAG 85.79 chromosome, complete genome.
CP051185.1:355485-355504
GAGGAGATTATGGAAGGAATGAAGCTTCTG355485GCTGAGGTTGTGGAAATGGTTTATAGAAAGGCTATGTTAGCGGTTTAATT
Arthrospira sp. str. PCC 8005 chromosome, complete genome.
FO818640.1:5256966-5256985
GAGGAGATTATGGAAGGAATGAAGCTTCTG5256966GCTGAGGTTGTGGAAATGGTTTATAGAAAGGCTATGTTAGCGGTTTAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCATTTCCACAACCTCAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCATTTCCACAACCTCAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.272 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=ACCATTTCCACAACCTCAGC&k=0&no_gap=0&offset=0&limit=50
0.509 | 0.237 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGAGGTTGTGGAAATGGT&k=0&no_gap=0&offset=0&limit=48
0.517 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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