GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:32:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MAG: Candidatus Brocadia sp. isolate AM9 chromosome, complete genome.
CP091279.1:318004-318023
GAGCAAAGGAAATTTTATTGATATTGGAGT318004ACCCCAAGATTATGCAGCAGCAGGGGGTTTTTTGAAGAGCAGCATTAAGG
HDE091P18.F HDE Setaria viridis genomic 5', genomic survey sequence.
KS149781.1:351-370
ATGATGGCCGGAAGGCACTTTGCACCGAGT351ACCCCAAGATTATGCAGCAGGTATGTAAAAACAGCTGTTGTTTAAGAGGG
Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:10274229-10274248
ATGATGGCCGGAAGGCACTTTGCACCGAGT10274229ACCCCAAGATTATGCAGCAGGTATGTAAAAACAGCTGTTGTTTAAGAGGG
Cenchrus purpureus cultivar elephant grass chromosome A2.
CP053455.1:22333243-22333262
ATGATGGCCGGAAGGCACTTTGCACCGAGT22333243ACCCCAAGATTATGCAGCAGGTATGCATCAGAAACAGCCGCTGTTTATAA
Cenchrus americanus genome assembly, chromosome: PMC23DB2.
OX387240.1:31438676-31438695
ACGATGGCCGGAAGGCACTTTGCACCGAGT31438676ACCCCAAGATTATGCAGCAGGTATGCAGAAACAGCCAGCCGCTGTTTATA
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001398.1:33092391-33092410
ACGATGGCCGGAAGGCACTTTGCACCGAGT33092391ACCCCAAGATTATGCAGCAGGTATGCAGAAACAGCCAGCCGCTGTTTATA
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001406.1:33668891-33668910
ACGATGGCCGGAAGGCACTTTGCACCGAGT33668891ACCCCAAGATTATGCAGCAGGTATGCAGAAACAGCCAGCCGCTGTTTATA
Cenchrus purpureus cultivar elephant grass chromosome B2.
CP053462.1:94351134-94351153
TGTCTTGAACAGCAGCTGTTTTCTGCATAC94351134CTGCTGCATAATCTTGGGGTACTCGGTGCAAAGTGCCTTCCGGCCATCAT
Phragmites australis genome assembly, chromosome: 3.
OY282614.1:36672287-36672306
GGCTGTTGTATAAATGGCGGTTGCGCATAC36672287CTGCTGCATAATCTTGGGGTACTCAGCACACAGTGCCTTGCGGCCATCGT
Phragmites australis genome assembly, chromosome: 4.
OY282615.1:16199021-16199040
GGCTGTTGTATAAATGGCGGTTGCACATAC16199021CTGCTGCATAATCTTGGGGTAATCGGAGCACAGGGCCTTGCGGCCATCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCCCAAGATTATGCAGCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCCCAAGATTATGCAGCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.155 | 0.146 | search_plus_done; http://172.18.8.135:50400/match?q=ACCCCAAGATTATGCAGCAG&k=0&no_gap=0&offset=0&limit=50
0.176 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=CTGCTGCATAATCTTGGGGT&k=0&no_gap=0&offset=0&limit=43
0.179 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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