GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 20:02:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GC_Bb016F18.F GC_Bb Glycine cyrtoloba genomic 5', genomic survey sequence.
HR010742.1:841-860
TCGAATCGACCCGATAGGTAGAGGTTTTGG841ACCCGGGTGCTGTTATAGTGACATTCTACTCCAGTCAT
GC_Bb106J02.F GC_Bb Glycine cyrtoloba genomic 5', genomic survey sequence.
HR015739.1:870-889
TCGAATCGACCCGATAGGTAGAGGTTTTGG870ACCCGGGTGCTGTTATAGTGACATTCTACTCCAGTCCCTTTGCAGC
GS_ABa071N23.R GS_ABa Glycine stenophita genomic 3', genomic survey sequence.
JS150478.1:806-825
TCAAATCGACCCGATAGGTACAGGTTTTGG806ACCCGGGTGCTGTTATAGTGACATTCCACTCCAGTCCATTTGCAGCAGTC
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:53028383-53028402
TCGAACCGACCCGAAAGGTATAGGTTTTGG53028383ACCCGGGTGCTGTTATAGTGACATTCTACACCAGTCCATTTGCAGCAGTC
Sphenostylis stenocarpa genome assembly, chromosome: 5.
OY731402.1:54896508-54896527
TCGGGTTGACCCGATAAAGATAGTCTCTGG54896508ACCCGGGTGCTGTTATAGTGACATTCTACTCCGTTCCACTTGCAGCAGTC
Sequence 1391 from patent US 10750711.
MV606502.1:238-257
GACTGCTGCACATGGACCGGAGTAGAATGC238CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Sequence 1392 from patent US 10750711.
MV606503.1:483-502
GACTGCTGCACATGGACCGGAGTAGAATGC483CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Sequence 1391 from patent US 11819027.
OT844538.1:238-257
GACTGCTGCACATGGACCGGAGTAGAATGC238CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Sequence 1392 from patent US 11819027.
OT844539.1:483-502
GACTGCTGCACATGGACCGGAGTAGAATGC483CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
ss39e01.y1 Gm-c1061 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1061-1105 5' similar to TR:O48705 O48705 CF-2.2 LIKE PROTEIN, mRNA sequence.
BE805201.1:249-268
GACTGCTGCACATGGACCGGAGTAGAATGC249CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
su13f10.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-1436 5' similar to TR:O48705 O48705 CF-2.2 LIKE PROTEIN, mRNA sequence.
BF324661.1:65-84
GACTGCTGCACATGGACCGGAGTAGAATGC65CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Glycine max clone cw162 disease resistance protein/LRR protein-related protein mRNA, complete cds.
FJ014841.1:238-257
GACTGCTGCACATGGACCGGAGTAGAATGC238CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:53032805-53032824
GACTGCTGCACATGGACCGGAGTAGAATGC53032805CACTATAACAGCACCCGGGTCCAAAGATTATTCTTAACGGGTCAAAAACC
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:53035570-53035589
AACTGTTGCAAATGAACTGGAGTAGAATGT53035570CACTATAACAGCACCCGGGTCCTAAGGCTCTTCCTAAGGTGTCAAGTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCCGGGTGCTGTTATAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCCGGGTGCTGTTATAGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.223 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=ACCCGGGTGCTGTTATAGTG&k=0&no_gap=0&offset=0&limit=50
0.498 | 0.275 | search_minus_done; http://172.18.8.135:50400/match?q=CACTATAACAGCACCCGGGT&k=0&no_gap=0&offset=0&limit=45
0.504 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).