GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:50:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 8218 from patent US 9481889.
KH326337.1:1054599-1054622
AGCAGTAGGATCACCATCCAGATCGACGGA1054599ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT
Sequence 8218 from patent US 9481889.
KH326337.1:1080108-1080131
AGCACTAGGCTCACCATACAGATCGACGGA1080108ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAAGCTTGAACAGTGGATT
Sequence 8218 from patent US 10633715.
MV130452.1:1054599-1054622
AGCAGTAGGATCACCATCCAGATCGACGGA1054599ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT
Sequence 8218 from patent US 10633715.
MV130452.1:1080108-1080131
AGCACTAGGCTCACCATACAGATCGACGGA1080108ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAAGCTTGAACAGTGGATT
Sequence 27 from patent US 10905061.
MX343390.1:1054599-1054622
AGCAGTAGGATCACCATCCAGATCGACGGA1054599ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT
Sequence 27 from patent US 10905061.
MX343390.1:1080108-1080131
AGCACTAGGCTCACCATACAGATCGACGGA1080108ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAAGCTTGAACAGTGGATT
Sequence 8218 from patent US 11371104.
OO311973.1:1054599-1054622
AGCAGTAGGATCACCATCCAGATCGACGGA1054599ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT
Sequence 8218 from patent US 11371104.
OO311973.1:1080108-1080131
AGCACTAGGCTCACCATACAGATCGACGGA1080108ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAAGCTTGAACAGTGGATT
Elaeis guineensis fruit ripening and abscission polygalacturonase (PG4) mRNA, complete cds.
JX233616.2:368-391
AGCAGTAGGATCACCATCCAGATCGACGGA368ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT
Elaeis guineensis polygalacturonase (PEC) mRNA, complete cds.
KC146055.1:322-345
AGCAGTAGGATCACCATCCAGATCGACGGA322ACCCTCGTCGCACCATCGAATTATGCTAATCTTCGCAATCTTGAACAGTGGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCCTCGTCGCACCATCGAATTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCCTCGTCGCACCATCGAATTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.597 | 0.588 | search_plus_done; http://172.18.8.135:50400/match?q=ACCCTCGTCGCACCATCGAATTAT&k=0&no_gap=0&offset=0&limit=50
0.630 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ATAATTCGATGGTGCGACGAGGGT&k=0&no_gap=0&offset=0&limit=40
0.630 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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