GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 23:40:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB036G05R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB036G05, genomic survey sequence.
DX037534.1:68-87
ATATTGTGAACGATGATAACGTAAGAAGTT68ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB068L09R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB068L09, genomic survey sequence.
DX062000.1:68-87
ATATTGTGAACGATGATAACGTAAGAAGTT68ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB110O09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB110O09, genomic survey sequence.
ED522885.1:85-104
ATATTGTGAACGATGATAACGTAAGAAGTT85ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB124E04R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB124E04, genomic survey sequence.
ED532657.1:55-74
ATATTGTGAACGATGATAACGTAAGAAGTT55ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:18140015-18140034
TTGTTGTGAACGATGAGAACGTAAGGAACT18140015ACCCTTAGCCGTAGAGTTTTGTTTGTATCCGAAAGCATGCGCTCCTGATT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:21453152-21453171
ATATTGTGAACGATGATAACGTAAGAAGTT21453152ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica rapa genome, scaffold: A08.
LR031575.1:20425973-20425992
ATATTGTGAACGATGATAACGTAAGAAGTT20425973ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26164576-26164595
ATATTGTGAACGATGATAACGTAAGAAGTT26164576ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Lepidium didymum genome assembly, chromosome: 3.
OY986993.1:18310243-18310262
ACAACACTAATTTTTGTTATTAAATTAATT18310243ACCCTTAGCCGTAGAGTTTTATTTGTCTCAGTCAGCATGCGTTCCTGTTC
G1148P328RG7.T0 Anolis carolinensis pooled normalized testes cDNA library Anolis carolinensis cDNA, mRNA sequence.
FG789226.1:676-695
ATCAATTTTTCCCTTGCGGTACTATCAATA676AAAACTCTACGGCTAAGGGTTCGATCCGCCTCTACTTTTTTTTGTCAATG
BOMHS60TF BO_2_3_KB Brassica oleracea genomic clone BOMHS60, genomic survey sequence.
BH679637.1:69-88
GAACAGGAGCTCATGCTTGCTGATACAAAC69AAAACTCTACGGCTAAGGGTAATTACTTACGTTCTCATCATTCACAACAA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:5054509-5054528
GAACAGGAGCGCATGCTTTCTGATACAAAC5054509AAAACTCTACGGCTAAGGGTAACTTCTTACGTTATCATCGTTCACAATAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:56523296-56523315
AATCAGGAGCGCATGCTTTCGGATACAAAC56523296AAAACTCTACGGCTAAGGGTAGTTCCTTACGTTCTCATCGTTCACAACAA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:57071982-57072001
AATCAGGAGCGCATGCTTTCGGATACAAAC57071982AAAACTCTACGGCTAAGGGTAGTTCCTTACGTTCTCATCGTTCACAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCCTTAGCCGTAGAGTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCCTTAGCCGTAGAGTTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.190 | 0.182 | search_plus_done; http://172.18.8.135:50400/match?q=ACCCTTAGCCGTAGAGTTTT&k=0&no_gap=0&offset=0&limit=50
0.298 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=AAAACTCTACGGCTAAGGGT&k=0&no_gap=0&offset=0&limit=41
0.301 | 0.003 | cgi_end;

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