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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:53:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Arachis hypogaea Ahy.Unigene27619 mRNA sequence.
JR567383.1:82-101
TTGAGTGCGATACCGGAGGCAGTGAGAGAG82ACCGGAGATGAGAGAGCTTGAGTGCGAGAGCGACAGCGAGAGAGATGAGA
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:31135731-31135750
TTGAGTGCGATACCGGAGGCAGTGAGAGAG31135731ACCGGAGATGAGAGAGCTTGAGTGCGAGAGCGACAGCGAGAGAGATGAGA
Arachis hypogaea cultivar Shitouqi chromosome B08.
CP031000.1:64354312-64354331
GACCTTGGTGTGAGACTGGAGGCTGTGAAG64354312ACCGGAGATGAGAGAGCTTGAGATTGAGAGAGAGTAAGGTGGGCATGGAT
Arachis hypogaea cultivar Shitouqi chromosome B08.
CP031000.1:68518132-68518151
CCTTGAGTGTGAGACTGGAGGCTGTGAAAG68518132ACCGGAGATGAGAGAGCTTGAGATTGAGAGAGAGTAAGGTGGGCATGGAT
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:32188256-32188275
TTGAGTGCGATACCGGAGGCAGTGAGAGAG32188256ACCGGAGATGAGAGAGCTTGAGTGCGAGAGCGACAGCGAGAGAGATGAGA
Arachis ipaensis cultivar K30076 chromosome 08.
CP049899.1:60262748-60262767
CCTTGAGTGTGAGACTGGAGGCTGTGAAAG60262748ACCGGAGATGAGAGAGCTTGAGATTGAGAGAGAGTAAGGTGGGCATGGAT
Arachis ipaensis cultivar K30076 chromosome 08.
CP049899.1:60368609-60368628
CCTTGAGTGTGAGACTGGAGGCTGTGAAAG60368609ACCGGAGATGAGAGAGCTTGAGATTGAGAGAGAGTAAGGTGGGCATGGAT
Persicaria maculosa genome assembly, chromosome: 16.
OY998266.1:28400985-28401004
AAGATACATGCTCCAGAAGATAAAGGAGTC28400985ACCGGAGATGAGAGAGCTTGTAGGGGGGATATCAAGCCGAAAGAGGTCAA
Microcaecilia unicolor genome assembly, chromosome: 6.
LR594637.1:14129712-14129731
AGTTAGCAAGGCCATTTTCCCTTTCTGTTT14129712CAAGCTCTCTCATCTCCGGTTTTACCTTCACTTTTTGTCAGTTTTTCTTT
VBL6_52_L06_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO337041.1:148-167
TCTCATCTCTCTCGCTGTCGCTCTCGCACT148CAAGCTCTCTCATCTCCGGTCTCTCTCACTGCCTCCGGTATCGCACTCAA
EST_ccle_evs_1041159 ccleevs mixed_tissue Caligus clemensi cDNA Caligus clemensi cDNA clone ccle_evs_511_039 5', mRNA sequence.
GO403900.1:369-388
TAGAGAGGAGACCTACGCTAAAAAGAACCG369CAAGCTCTCTCATCTCCGGTCAACCAAACAGGAGGAAATGGAGAGCCCCA
EST_ccle_evs_1041990 ccleevs mixed_tissue Caligus clemensi cDNA Caligus clemensi cDNA clone ccle_evs_512_102 5', mRNA sequence.
GO404765.1:369-388
TAGAGAGGAGACCTACGCTAAAAAGAACCG369CAAGCTCTCTCATCTCCGGTCAGCCAAGCAGGAGGAAATGGAGAGCCTCA
EST_ccle_evs_1044823 ccleevs mixed_tissue Caligus clemensi cDNA Caligus clemensi cDNA clone ccle_evs_520_247 5', mRNA sequence.
GO410982.1:369-388
TAGAGAGGAGACCTACGCTAAAAAGAACCG369CAAGCTCTCTCATCTCCGGTCAGCCAAGCAGGAGGAAATGGAGAGCCTCA
DSL_002486 Developing seed cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocpga0_0029_B04.ab1, mRNA sequence.
JK149406.1:155-174
TCTCATCTCTCGCGCTGTCGCTCTCGCACT155CAAGCTCTCTCATCTCCGGTCTCTCTCACTGCCTCCGGTATCGCACTCAA
RIRL_004373 Ralstonia solanacearum challenged root cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprra0_0051_F04.ab1, mRNA sequence.
JK204465.1:126-145
TCTCATCTCTCTCGCTGTCGCTCTCGCACT126CAAGCTCTCTCATCTCCGGTCTCTCTCACTGCCTCCGGTATCGCACTCAA
Arachis hypogaea cultivar Shitouqi chromosome B08.
CP031000.1:63981132-63981151
ATCCATGCCCACCTTACTCTCTCTCAATCT63981132CAAGCTCTCTCATCTCCGGTCTTTCACAGCCTCCAGTCTCACACTCAAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCGGAGATGAGAGAGCTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCGGAGATGAGAGAGCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=ACCGGAGATGAGAGAGCTTG&k=0&no_gap=0&offset=0&limit=50
0.819 | 0.639 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGCTCTCTCATCTCCGGT&k=0&no_gap=0&offset=0&limit=42
0.824 | 0.005 | cgi_end;

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