GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-28 19:27:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sus scrofa scrofa breed NS chromosome 16.
CP071567.1:57081964-57081983
TTGTCATCTTCCTTTCCTGTTTGATTTTAA57081964ACCTCAAAACCCACCACAAATTCTAATTTCAAAAGACAAATATGGCTTTG
Sus scrofa genome assembly, chromosome: 16.
OY997223.1:57980088-57980107
TTGTCATCTTCCTTTCCTGTTTGATTTTAA57980088ACCTCAAAACCCACCACAAATTCTAATTTCAAAAGACAAATATGGCTTTG
PVEPSE2023B04.g Common bean seedling EST Library - PVEPSE2 Phaseolus vulgaris cDNA clone PVEPSE2023B04 5', mRNA sequence.
CB540703.1:60-79
TCACTCACGCCACCACACTCCTCCACGCCC60ACCTCAAAACCCACCACAAAAAGCCCTCCACCACCACCACCACCACCACT
Vigna angularis mRNA, clone: VES06I10.
HX944541.1:69-88
TCACTCACGCCACCACACTCCTCCACGCCC69ACCTCAAAACCCACCACAAAAAGCCCTCCTCCACCGCCACCACCACCACC
seq3663 091111_plate_21c11.b1 Common bean full-length cDNA Library Phaseolus vulgaris cDNA 5', mRNA sequence.
JK040475.1:169-188
TCACTCACGCCACCACACTCCTCCACGCCC169ACCTCAAAACCCACCACAAAAAGCCCTCCACCACCACCACCACCACCACT
seq5575 091111_plate_26m10.b1 Common bean full-length cDNA Library Phaseolus vulgaris cDNA 5', mRNA sequence.
JK042026.1:94-113
TCACTCACGCCACCACACTCCTCCACGCCC94ACCTCAAAACCCACCACAAAAAGCCCTCCACCACCACCACCACTCTCCCC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-424K14.
FP016149.3:64291-64310
TTGTCATCTTCCTTTCCTGTTTGATTTTAA64291ACCTCAAAACCCACCACAAATTCTAATTTCAAAAGACAAATATGGCTTTG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:27754975-27754994
TACTAGGTAAATACAACACACAATGCAAAG27754975ACCTCAAAACCCACCACAAACAATCAATTAGTTACTTTTAATCCCTTTAC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 7.
CP124713.1:138658823-138658842
TACTAGGTAAATACAACACACAAGGAAAAG138658823ACCTCAAAACCCACCACAAACAATCAATTAGTTGCTTTTAATCCTTTTAC
Pieris napi genome assembly, chromosome: 24.
FR997718.1:3526549-3526568
TCCCTTTCTCTCCAAATGTCTTGTTTGATC3526549ACCTCAAAACCCACCACAAAAAAGATATTAAAACCGCATATGTAGTCGAC
Tachinus rufipes genome assembly, chromosome: 4.
OZ010744.1:102822069-102822088
TAAAAACACATCTTTGAGCTGACCAAATTA102822069ACCTCAAAACCCACCACAAAAGCTACCCCAACTCTCTGAACCCATAACAA
Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
AP015043.1:4221008-4221027
GGTGGTGGTGGTGGCGGTGGAGGAGGGCTT4221008TTTGTGGTGGGTTTTGAGGTGGGCGTGGAGGAGTGTGGTGGCGTGAGTGA
Pieris napi genome assembly, chromosome: 24.
HG993186.1:3939348-3939367
GTCGACTACATATGCGGTTTTAATATCTTT3939348TTTGTGGTGGGTTTTGAGGTGATCAAACAAGACATTTGGAGAGAAAGGGA
Pieris napi genome assembly, chromosome: 24.
HG993186.1:4313716-4313735
GTCGACTACATATGCGGTTTTAATATCTTT4313716TTTGTGGTGGGTTTTGAGGTGATCAAACAAGACATTTGGAGAGAAAGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTCAAAACCCACCACAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTCAAAACCCACCACAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.373 | 0.365 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTCAAAACCCACCACAAA&k=0&no_gap=0&offset=0&limit=50
0.401 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTGGTGGGTTTTGAGGT&k=0&no_gap=0&offset=0&limit=39
0.403 | 0.002 | cgi_end;

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