GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:20:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chionomys nivalis genome assembly, chromosome: 4.
OX465452.1:103285610-103285629
ATCTTACTTTTATGTGTCTTCTGAATCTAT103285610ACCTCCCAAGCTTCTCTTTGCTGCTCCAAGAGAAGCAAGATGGTGGTCAA
0211739 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV145805.1:264-283
GAGCTTTCTTGGATCAATTGATCTTCTTCC264ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
0213264 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV147330.1:157-176
GAGATTTCTTGGATCAAGTGATCTTCTTCC157ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
0152613 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180791.1:147-166
GAGATTTCTTGGATCAAGTGATCTTCTTCC147ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
0201617 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV187409.1:175-194
GAGATTTCTTGGATCAAGTGATCTTCTTCC175ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
0201629 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV187421.1:175-194
GAGATTTCTTGGATCAAGTGATCTTCTTCC175ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF01D06, 3'-end sequence.
FY068450.1:152-171
GAGATTTCTTGGATCAAGTGATCTTCTTCC152ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF02N13, 3'-end sequence.
FY069036.1:150-169
GAGATTTCTTGGATCAAGTGATCTTCTTCC150ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31E03, 3'-end sequence.
FY423239.1:151-170
GAGATTTCTTGGATCAAGTGATCTTCTTCC151ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF35A23, 3'-end sequence.
FY424558.1:149-168
GAGATTTCTTGGATCAAGTGATCTTCTTCC149ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9269.
FX722923.1:189-208
GAGCTTTCTTGGATCAATTGATCTTCTTCC189ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGAGTATGGATTC
TSA: Pachycladon fastigiatum 49567_208_3171_7_41.Pafaleaf mRNA sequence.
JR016594.1:88-107
ATACTCTTAGGGATCAATTGATCTTCTTCC88ACCTCCCAAGCTTCTCTTTGCCCTTACGAGTGGCAATGGCGTGTGGATTC
Brassica napus GSS, clone JBnB101G06, end read, primer SACL2(forward).
FP087287.1:180-199
GAGCTTTCTTGGATCAATTGATCTTCTTCC180ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTGGGTTA
Brassica rapa subsp. pekinensis clone KBrB039A22, complete sequence.
CU740082.1:125208-125227
GAGCTTTCTTGGATCAATTGATCTTCTTCC125208ACCTCCCAAGCTTCTCTTTGCCCTGCTCAAATTTTTTGATTAAAATACAT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:4432553-4432572
GAGCTTTCTTGGATCAATTGATCTTCTTCC4432553ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTGGGTTAAAATACAT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:2067913-2067932
GAGATTTCTTGGATCAAGTGATCTTCTTCC2067913ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTTGGGTTAAAATACA
Camelina sativa cultivar CO46 chromosome 4.
CP131553.1:31096579-31096598
TATTTCTTAGAGATCAATTGTTCTTCTTCC31096579ACCTCCCAAGCTTCTCTTTGCCCTGTCCATAATATTTATTCATCAGATCG
Capsella bursa-pastoris isolate WGS_leaf chromosome 4.
CP144186.1:17755044-17755063
TTTTCCTTAAAGATCAATTGATTTTCTTCC17755044ACCTCCCAAGCTTCTCTTTGCCCTGTCCATATTTTTTACTCATCAGATCG
Capsella bursa-pastoris isolate WGS_leaf chromosome 12.
CP144194.1:19283134-19283153
TTTTCCTTAAAGATCAATTGATTTTCTTCC19283134ACCTCCCAAGCTTCTCTTTGCCCTGTCCATATTTTTTACTCATCAGATCG
Brassica napus genome assembly, chromosome: A05.
HG994359.1:2112512-2112531
GAGATTTCTTGGATCAAGTGATCTTCTTCC2112512ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTTGGGTTAAAATACA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:4176893-4176912
GAGCTTTCTTGGATCAATTGATCTTCTTCC4176893ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTGGGTTAAAATACAT
Brassica rapa genome, scaffold: A05.
LR031570.1:8007695-8007714
GAGATTTCTTGGATCAAGTGATCTTCTTCC8007695ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTTGGGTTAAAATACA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:4146378-4146397
GAGCTTTCTTGGATCAATTGATCTTCTTCC4146378ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTGGGTTAAAATACAT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:2093354-2093373
GAGATTTCTTGGATCAAGTGATCTTCTTCC2093354ACCTCCCAAGCTTCTCTTTGCCCTGCTCAATTTTTTTGGGTTAAAATACA
Nasturtium officinale genome assembly, chromosome: 13.
OY978511.1:9953410-9953429
ACTCTTTCTTGTATTAATTCATCTTCTTCC9953410ACCTCCCAAGCTTCTCTTTGCCCTGTTGTAATACATTATAGATCCAAGGA
Cardamine chenopodiifolia genome assembly, chromosome: 28.
OZ000486.1:17753177-17753196
TCTCTTTCTTGTATCAGTTGATCTTCTTCC17753177ACCTCCCAAGCTTCTCTTTGCCCTGTTATAATACATCACAGATCGAAGGA
Sequence 1 from Patent EP1725664.
HH979388.1:690-709
GAATCCATACTCCATTGCCACTCGTAAGGG690CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Sequence 5 from Patent EP1725664.
HH979392.1:1792-1811
ATGTATTTTAACCCAAAAAATTGAGCAGGG1792CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGA
Sequence 2631 from patent US 9096865.
HL038276.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Sequence 2633 from patent US 9096865.
HL038278.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Sequence 2631 from Patent EP2440033.
JC300185.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Sequence 2633 from Patent EP2440033.
JC300187.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Sequence 2631 from patent US 10006040.
MI841130.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Sequence 2633 from patent US 10006040.
MI841132.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Sequence 2631 from patent US 10791690.
MV738451.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Sequence 2633 from patent US 10791690.
MV738453.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Sequence 2631 from patent US 11286495.
MY951638.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Sequence 2633 from patent US 11286495.
MY951640.1:657-676
GAATCCATACTCCATTGCCACTCGTAAGGG657CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
0213564 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV147630.1:285-304
GAATCCATACTCCATTGCCACTCGTAAGGG285CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
0152752 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180862.1:726-745
GAATCCATACTCCATTGCCACTCGTAAGGG726CAAAGAGAAGCTTGGGAGGTGGAAGAA
0201886 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV187678.1:702-721
GAATCCATACTCCATTGCCACTCGTAAGGG702CAAAGAGAAGCTTGGGAGGTGGAAGAA
0201900 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV187692.1:699-718
GAATCCATACTCCATTGCCACTCGTAAGGG699CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTT
BR103398 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-27E11 5', mRNA sequence.
EX119568.1:635-654
GAATCCATACTCCATTGCCACTCGTAAGGG635CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
BR115991 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-17D11 5', mRNA sequence.
EX132161.1:635-654
GAATCCATACTCCATTGCCACTCGTAAGGG635CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
BR117973 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-42F06 5', mRNA sequence.
EX134143.1:685-704
GAATCCATACTCCATTGCCACTCGTAAGGG685CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF01D06, 5'-end sequence.
FY063781.1:673-692
GAATCCATACTCCATTGCCACTCGTAAGGG673CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31E03, 5'-end sequence.
FY418174.1:670-689
GAATCCATACTCCATTGCCACTCGTAAGGG670CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1591.
FX748968.1:795-814
GAATCCATACTCCATTGCCACTCGTAAGGG795CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCACTTGATCCAAGAAATCTC
Brassica oleracea thiol methyltransferase 1 (tmt1) mRNA, complete cds.
AF387791.1:690-709
GAATCCATACTCCATTGCCACTCGTAAGGG690CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCAAGAAAGCTC
Brassica oleracea thiol methyltransferase 1 (tmt1) gene, complete cds.
AF387793.1:1792-1811
ATGTATTTTAACCCAAAAAATTGAGCAGGG1792CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGA
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 4.
CP094634.1:2377945-2377964
CTACTCATAGTAAAAAAATTATGGACAGGG2377945CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCTCTAAGAAATA
Camelina sativa cultivar CO46 chromosome 5.
CP131554.1:2011028-2011047
CGATCTGATGAATAAAAATTATGGACAGGG2011028CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCTCTAAGAGATA
Cardamine flexuosa genome assembly, chromosome: 4.
OY743217.1:1617656-1617675
ATTTGCTATAATTTGATGTATAATACAGGG1617656CAAAGAGAAGCTTGGGAGGTGGAAGAAGATAAATTGATCCAAGAAAGAGT
Draba incana genome assembly, chromosome: 1.
OY755202.1:4077074-4077093
TGATTGATAATTAAAAAAAAATGAACAGGG4077074CAAAGAGAAGCTTGGGAGGTGGAAGAAGGTCAACTGATCCAAGAACTAAA
Draba incana genome assembly, chromosome: 3.
OY755204.1:3226392-3226411
TGATTGATAATTTAAAAAAAATAAACAGGG3226392CAAAGAGAAGCTTGGGAGGTGGAAGAAGCTCAACTGATCCAAGAAAAAGA
Barbarea vulgaris genome assembly, chromosome: 6.
OY763892.1:1816298-1816317
TCCTTGGATCTATGATGTATCATAACAGGG1816298CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAACTAATCCAAGAAAGAGT
Nasturtium officinale genome assembly, chromosome: 6.
OY978504.1:1331080-1331099
TCCTTCGATATGTGATGTATTATAACAGGG1331080CAAAGAGAAGCTTGGGAGGTGGAAGAAGAACAATTGATCCAAGAAAGTGT
Cardamine chenopodiifolia genome assembly, chromosome: 4.
OZ000462.1:1266449-1266468
CCTTCGATCTGTGATGTATTATAACAGGGG1266449CAAAGAGAAGCTTGGGAGGTGGAAGAAGATCAATTGATCCGAGAAAGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTCCCAAGCTTCTCTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTCCCAAGCTTCTCTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.125 | 1.117 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTCCCAAGCTTCTCTTTG&k=0&no_gap=0&offset=0&limit=50
2.480 | 1.355 | search_minus_done; http://172.18.8.135:50400/match?q=CAAAGAGAAGCTTGGGAGGT&k=0&no_gap=0&offset=0&limit=24
2.501 | 0.021 | cgi_end;

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