GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:12:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sus scrofa scrofa breed NS chromosome 8.
CP071559.1:7461521-7461540
GTCCCCTTGGGTAGGGCCCCCCCCCAAACT7461521ACCTGCTGCTCTGGTTCAATTCAGATCATGTTCAGCATTCATTCAATAAA
Sus scrofa genome assembly, chromosome: 8.
OY997215.1:7316768-7316787
CCCTTGGGTAGGGCCCCCCCCCCCCAAACT7316768ACCTGCTGCTCTGGTTCAATTCAGATCGTGTTCAGCATTCATTCAATAAA
Acipenser ruthenus genome assembly, chromosome: 20.
OV737701.1:19023248-19023267
CTTTATTTTATGGGACTCCTCTCGGACACT19023248ACCTGCTGCTCTGGTTCAATGCAGGGGTGCATGGGATCAGTGTTTTGATT
Acipenser ruthenus genome assembly, chromosome: 20.
OV754628.1:18526902-18526921
CTTTATTTTATGGGACTCCTCTCGGACACT18526902ACCTGCTGCTCTGGTTCAATGCAGGGGTGCATGGGATCAGTGTTTTGATT
Porphyra yezoensis cDNA, clone:PF023b04_r, 5'end.
AU188224.1:329-348
CTATCGCTTTCTCCGTGTTTTTCTCCCTCA329ACCTGCTGCTCTGGTTCAATGGCTCTACGGGAGCAGTACCGTTCCTTACG
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 1.
CP094631.1:34018240-34018259
GTGTACATGTCAACAATATCTTGCTGCACC34018240ACCTGCTGCTCTGGTTCAATGTTCACTGTCAGAACCGGTTTCACAACTGC
AU_BAC097B1D07_Sp6 CHORI212 Ictalurus punctatus genomic 3', genomic survey sequence.
FI896906.1:90-109
GTATTTTTTGCGTGTAATTAATGTTGGCCT90ATTGAACCAGAGCAGCAGGTAAAAGCAGAGACGAGTGACCGGACGATCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTGCTGCTCTGGTTCAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTGCTGCTCTGGTTCAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.115 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTGCTGCTCTGGTTCAAT&k=0&no_gap=0&offset=0&limit=50
0.166 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGAACCAGAGCAGCAGGT&k=0&no_gap=0&offset=0&limit=44
0.167 | 0.001 | cgi_end;

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