GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:02:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys dimidiatus genome assembly, chromosome: 15.
OU015388.1:23155030-23155049
CTTAGACTAATTTGTTATGCGGGAAAGGAC23155030GACCGACACAAGTTGAAGGTAAGTGTTTGGGCAATTTGTCTAGGACCCAG
RT1275 Chinese cabbage root library Brassica rapa subsp. pekinensis cDNA clone RT1275 5', mRNA sequence.
CV432889.1:414-433
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA414GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4704.
FX696600.1:433-452
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA433GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGACATACCTCAAGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_48778.
FX735131.1:146-165
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA146GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGACATACCTCAAGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
AC189621.1:4847-4866
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA4847GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:1160906-1160925
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA1160906GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:1073220-1073239
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA1073220GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA
Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
KF430058.1:413-432
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA413GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGACATACCTCAAGCT
Brassica rapa genome, scaffold: A09.
LR031568.1:868966-868985
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA868966GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:1054451-1054470
ACGACCTCCAAAGTAGAGTTTTGTTGGCGA1054451GACCGACACAAGTTGAAGGTCTTCAACAACATGAGGTACTTAATTGCTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCTTCAACTTGTGTCGGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTTCAACTTGTGTCGGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.133 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTTCAACTTGTGTCGGTC&k=0&no_gap=0&offset=0&limit=50
0.229 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=GACCGACACAAGTTGAAGGT&k=0&no_gap=0&offset=0&limit=50
0.236 | 0.007 | cgi_end;

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