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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:24:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Results:

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Notothenia rossii genome assembly, chromosome: 1.
OX449111.1:83749503-83749522
TTCTTTACACAGGATGAGAGGAAGCAGCTT83749503ACCTTCTTCATCCTCAGCGTAACTGATGGGACCCACCGAGAGCCGGCCCA
0112881 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV107569.1:253-272
CATGATATCTTTTTTAATCCTCATGTATCC253ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACCGGCT
CCPd_EST_302 Piriformospora indica colonized with Chinese cabbage roots library Brassica rapa subsp. chinensis cDNA, mRNA sequence.
JZ469479.1:242-261
TGGATCAACACCTCCAAACACAAGTTCACC242ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAGAATGAAAACACCGGCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5427.
FX658511.1:916-935
TGGATCAACACCTCCAAATACAAGTTCACC916ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACGGGCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4188.
FX696629.1:929-948
TGGATCAACACCTCCAAACACAAGTTCACC929ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAGAATGAAAACACCGGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1977.
FX735330.1:1032-1051
TGGATCAACACCTCCAAATACAAGTTCACC1032ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACGGGCT
Raphanus sativus DNA, clone: RSDH46M03_FP-1.
GA896935.1:145-164
TGGATCAACACCTCCAAATACAAGTTCACC145ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACGGGCT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:1886012-1886031
TGGATCAACACCTCCAAACACAAGTTCACC1886012ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAGAATGAAAACACCGGCT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:3272702-3272721
TGGATCAACACCTCCAAATACAAGTTCACC3272702ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACCGGCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:18290018-18290037
TGGGTCAACACCTCCAAACACAAGTTCACC18290018ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACCGGCT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:27272772-27272791
TGGGTCAACACCTCCAAACACAAGTTCACC27272772ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACCGGCT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:8597298-8597317
TGGATCAACACCTCCAAATACAAGTTCACC8597298ACCTTCTTCATCCTCAGCGTTACGGTTAAGCCAAAATGAAAACACGGGCT
Pseudochaenichthys georgianus genome assembly, chromosome: 4.
LR792549.1:12487365-12487384
TGGGCCAGCTCTCGGTGGGTCCCATCAGTT12487365ACGCTGAGGATGAAGAAGGTAAGCTGCTTCCTCTCATCTTGTGTAAAGAA
Trachurus trachurus genome assembly, chromosome: 10.
LR991631.1:31789626-31789645
GATTCAGCACCAACGTCAGTTGTGCACTGG31789626ACGCTGAGGATGAAGAAGGTGCTGAAGATGACCACAGTTAAACTGATGCT
Microchirus variegatus genome assembly, chromosome: 7.
OY735180.1:11524356-11524375
CCCACAGCATTCTTCATTCCCAGTGCGCTC11524356ACGCTGAGGATGAAGAAGGTGGCGTCTCTGTAACATGATCGCGGTGAACA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a013O02_SP6.
AM060039.1:208-227
AGCCGGTGTTTTCATTTTGGCTTAACCGTA208ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BN25.064G23F020416 BN25 Brassica napus cDNA clone BN25064G23, mRNA sequence.
CD826601.1:711-730
AGCCGGTGTTTTCATTCTGGCTTAACCGTA711ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCA
BN25.070I14F020125 BN25 Brassica napus cDNA clone BN25070I14, mRNA sequence.
CD828363.1:242-261
AGCCGGTGTTTTCATTTTGGCTTAACCGTA242ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCA
EL3235R Brassica embryo library (EL) Brassica napus cDNA clone EL3235 5', mRNA sequence.
CN828996.1:574-593
AGCCGGTGTTTTCATTTTGGCTTAACCGTA574ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
47-E022680-021-013-N12-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N1213Q, mRNA sequence.
CX192040.1:380-399
AGCCGGTGTTTTCATTCTGGCTTAACCGTA380ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
47-E022740-021-013-N12-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N1213Q, mRNA sequence.
CX192049.1:379-398
AGCCGGTGTTTTCATTCTGGCTTAACCGTA379ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
altr007xh04 A. brassicicola mycelial culture infecting B. oleracea Alternaria brassicicola cDNA clone altr007xh04, mRNA sequence.
DN478208.1:85-104
AGCCGGAGTTTTCATTTTGGCTTAACCGTA85ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGCTGACCCA
40JKME7D_UP_025_E04_24MAY2004_024 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY016819.1:408-427
AGCCGGTGTTTTCATTTTGGCTTAACCGTA408ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
63JKCOT5_T3_011_H05_24JAN2005_033 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY018199.1:475-494
AGCCGGTGTTTTCATTTTGGCTTAACCGTA475ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
48RDOAM_UP_036_H01_14SEP2004_001 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY018961.1:172-191
AGCCGGTGTTTTCATTTTGGCTTAACCGTA172ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
4ETGS72H_UP_009_B01_14FEB2005_013 Brassica napus 4ETGS72h Brassica napus cDNA 5', mRNA sequence.
EE433634.1:36-55
AGCCGGTGTTTTCATTTTGGCTTAACCGTA36ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BNBS2DCT_UP_003_H09_11MAR2005_065 Brassica napus seeds BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EE451288.1:473-492
AGCCGGTGTTTTCATTTTGGCTTAACCGTA473ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCC
BNSCS3CT_UP_020_C01_11JAN2005_011 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466521.1:492-511
AGCCGGTGTTTTCATTTTGGCTTAACCGTA492ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BNYS8DCT_UP_026_D05_20APR2005_041 Brassica napus seeds BNYS8DCT Brassica napus cDNA 5', mRNA sequence.
EE482477.1:137-156
AGCCGGTGTTTTCATTTTGGCTTAACCGTA137ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCA
DHBN8DCT_UP_015_E08_26FEB2005_056 BRASSICA NAPUS SEEDS BNDH8DCT Brassica napus cDNA 5', mRNA sequence.
EE485441.1:122-141
AGCCGGTGTTTTCATTTTGGCTTAACCGTA122ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
37RDBRH_UP_027_H03_25JUN2004_017 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524356.1:381-400
AGCCGGTGTTTTCATTCTGGCTTAACCGTA381ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
OL3482R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3482, mRNA sequence.
EH418728.1:80-99
AGCCGGTGTTTTCATTTTGGCTTAACCGTA80ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
69JKME5D_T3_013_D01_27MAR2005_009 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES267238.1:639-658
AGCCGGTGTTTTCATTTTGGCTTAACCGTA639ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
69JKME5D_T3_036_G02_01APR2005_004 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES269161.1:679-698
AGCCGGTGTTTTCATTTTGGCTTAACCGTA679ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BNARO4GH_T3_007_H06_24NOV2006_034 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES903015.1:681-700
AGCCGGTGTTTTCATTCTGGCTTAACCGTA681ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
BNARO4GH_T3_016_B01_24NOV2006_013 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES904155.1:680-699
AGCCGGTGTTTTCATTTTGGCTTAACCGTA680ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BNARO5GH_T3_020_G02_01DEC2006_004 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES907075.1:713-732
AGCCGGTGTTTTCATTCTGGCTTAACCGTA713ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
BNARO5GH_T3_026_B08_01DEC2006_062 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES908027.1:720-739
AGCCGGTGTTTTCATTTTGGCTTAACCGTA720ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BNARO5GH_T3_030_G01_01DEC2006_003 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES908449.1:713-732
AGCCGGTGTTTTCATTCTGGCTTAACCGTA713ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
BNARO6GH_T3_015_B01_07DEC2006_013 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910074.1:720-739
AGCCGGTGTTTTCATTTTGGCTTAACCGTA720ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
BNARO6GH_T3_021_G05_08DEC2006_035 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910692.1:703-722
AGCCGGTGTTTTCATTTTGGCTTAACCGTA703ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
46RDOAG_UP_058_H01_01FEB2006_001 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES938076.1:409-428
AGCCGGTGTTTTCATTTTGGCTTAACCGTA409ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
46RDOAG_UP_072_G06_02FEB2006_036 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES939177.1:446-465
AGCCGGTGTTTTCATTTTGGCTTAACCGTA446ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BNSCS2CT_UP_047_F10_17APR2007_070 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV019266.1:467-486
AGCCGGTGTTTTCATTTTGGCTTAACCGTA467ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BNSCS2CT_UP_312_G08_27MAY2007_052 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV038440.1:122-141
AGCCGGTGTTTTCATTTTGGCTTAACCGTA122ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BNSCS3CT_UP_268_F01_18MAY2007_005 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV058180.1:536-555
AGCCGGTGGTTTCATTTTGGCTTAACCGTA536ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BNSCS3CT_UP_269_D02_18MAY2007_010 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV058242.1:32-51
AGCCGGTGTTTTCATTCCGGCTTAACCGTA32ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
BNSCS5CT_UP_100_H08_29MAY2007_050 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV084868.1:36-55
AGCCGGTGTTTTCATTTTGGCTTAACCGTA36ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
0121744 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116432.1:146-165
AGCCGGTGTTTTCATTTTGGCTTAACCGTA146ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
0122253 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116941.1:774-793
AGCCGGTGTTTTCATTTTGGCTTAACCGTA774ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGGAGGTGTGACCCA
0159302 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV184531.1:775-794
GAGCCGGTGTTTTCATTTTGGCTTAACCGT775ACGCTGAGGATGAAGAAGGTGTG
0190015 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV216224.1:202-221
AGCCGGTGTTTTCATTTTGGCTTAACCGTA202ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
0139283 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV222816.1:369-388
AGCCGGTGTTTTCATTTTGGCTTAACCGTA369ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_12148.
FX744592.1:791-810
AGCCGGTGTTTTCATTCTGGCTTAACCGTA791ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
TSA: Raphanus sativus RS17933 mRNA sequence.
JT802480.1:705-724
AGCCGGTGTTTTCATTTTGGCTTAACCGTA705ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
BOGHI52TR BOGH Brassica oleracea genomic clone BOGHI52, genomic survey sequence.
BH572615.1:15-34
TTGGCTTAACCGTA15ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:23639016-23639035
AGCCGGTGTTTTCATTTTGGCTTAACCGTA23639016ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGACCCA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:24428576-24428595
AGCCGGTGTTTTCATTCTGGCTTAACCGTA24428576ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:38462581-38462600
AGCCGGTGTTTTCATTTTGGCTTAACCGTA38462581ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCA
Brassica rapa genome, scaffold: A08.
LR031575.1:23199877-23199896
AGCCGGTGTTTTCATTCTGGCTTAACCGTA23199877ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:47836283-47836302
AGCCGGTGTTTTCATTTTGGCTTAACCGTA47836283ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:28986753-28986772
AGCCGGTGTTTTCATTCTGGCTTAACCGTA28986753ACGCTGAGGATGAAGAAGGTGGTGAACTTGTGTTTGGAGGTGTTGATCCA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:35435652-35435671
AGCCCGTGTTTTCATTTTGGCTTAACCGTA35435652ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
Brassica napus aspartic protease gene, complete cds.
U55032.1:3234-3253
AGCCGGTGTTTTCATTTTGGCTTAACCGTA3234ACGCTGAGGATGAAGAAGGTGGTGAACTAGTATTTGGAGGTGTTGATCCA
B.oleracea mRNA for aspartic protease.
X80067.1:694-713
AGCCGGTGTTTTCATTTTGGCTTAACCGTA694ACGCTGAGGATGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCA
Volucella inflata genome assembly, chromosome: 5.
OV743720.1:38821884-38821903
AATATAATATGTTGAGATCATTTAATTAGA38821884ACGCTGAGGATGAAGAAGGTAGAGGCCTTGAATAAAATCAGATCCGTTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCTTCTTCATCCTCAGCGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCTTCTTCATCCTCAGCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.335 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=ACCTTCTTCATCCTCAGCGT&k=0&no_gap=0&offset=0&limit=50
2.957 | 2.621 | search_minus_done; http://172.18.8.135:50400/match?q=ACGCTGAGGATGAAGAAGGT&k=0&no_gap=0&offset=0&limit=38
2.991 | 0.035 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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