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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCF10O22, 5' end sequence.
FY430594.1:19-38
ACCGTGCGGTTGATCATA19ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Raphanus sativus mRNA, clone: RSCF20H12, 5' end sequence.
FY433022.1:16-35
GTGCGGTTGATCATA16ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Raphanus sativus mRNA, clone: RSCL19F20, 5' end sequence.
FY439337.1:6-25
TCATA6ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Raphanus sativus mRNA, clone: RSCR01B01, 5' end sequence.
FY439905.1:19-38
CCGTGCGGTTGAATCATA19ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Raphanus sativus mRNA, clone: RSCS11B17, 5' end sequence.
FY449696.1:4-23
ATA4ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Raphanus sativus mRNA, clone: RSCS24A23, 5' end sequence.
FY454330.1:40-59
TGGTTCATTAAACCGTGCGGTTGAATCATA40ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11150.
FX711015.1:65-84
TCAATAAATAAACCGTGTAGTTGAATCATA65ACGACTTTCCGTTGGATCTGAATCTCTTCTTCTCTCTCTCTTTACGATGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_47306.
FX762642.1:82-101
TGGTTCATTAAACCGTGCGGTTGAATCATA82ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTCTCTCTCTCTCTCTCTC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:41029156-41029175
TCAATAAATAAACCGTGTAGTTGAAACATA41029156ACGACTTTCCGTTGGATCTGAATCTCTTCTTCTCTCTCTCTTTACGATGA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:37039153-37039172
TCAATAAATAAACCGTGTAGTTGAAACATA37039153ACGACTTTCCGTTGGATCTGAATCTCTTCTTCTCTCTCTCTTTACGATGA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:51681107-51681126
TCAATAAATAAACCGTGTCGTTGAATCATA51681107ACGACTTTCCGTTGGATCTGAATCTCTCTTTCTCGATGAACGATTTATTT
Brassica rapa genome, scaffold: A05.
LR031570.1:42771828-42771847
TCAATAAATAAACCGTGTAGTTGAATCATA42771828ACGACTTTCCGTTGGATCTGAATCTCTTCTTCTCTCTCTCTTTACGATGA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:49481515-49481534
TCAATAAATAAACCGTGTCGTTGAATCATA49481515ACGACTTTCCGTTGGATCTGAATCTCTCTTTCTCGATGAACGATTTATTT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:39521105-39521124
TGGTTCATTAAACCGTGCGGTTGAATCATA39521105ACGACTTTCCGTTGGATCTGAATCTCTCTTTTTTCTCTCTCTCTCAATAT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:39461141-39461160
TCAATAAATAAACCGTGTAGTTGAATCATA39461141ACGACTTTCCGTTGGATCTGAATCTCTTCTTCTCTCTCTCTTTACGATGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1464.
FX660358.1:1197-1216
GAGAGAGAGAGAGAGAGAAAAAGAGAGATT1197CAGATCCAACGGAAAGTCGTTATGATTCAACCGCACGGTTTAATGAACCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_53392.
FX754048.1:686-705
TCATCGTAAAGAGAGAGAGAAGAAGAGATT686CAGATCCAACGGAAAGTCGTTATGTTTCAACTACACGGTTTATTTATTGA
BOHJN75TF BOHJ Brassica oleracea genomic clone BOHJN75, genomic survey sequence.
BH581523.1:182-201
AAATAAATCGTTCATCGAGAAAGAGAGATT182CAGATCCAACGGAAAGTCGTTATGATTCAACGACACGGTTTATTTATTGA
BONSI54TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONSI54, genomic survey sequence.
BZ497010.1:212-231
AAATAAATCGTTCATCGAGAAAGAGAGATT212CAGATCCAACGGAAAGTCGTTATGATTCAACGACACGGTTTATTTATTGA
Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07.
AP011622.1:31040-31059
TCATCGTAAAGAGAGAGAGAAGAAGAGATT31040CAGATCCAACGGAAAGTCGTTATGATTCAACTACACGGTTTATTTATTGA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:6084465-6084484
AAATAAATCGTTCATCGAGAAAGAGAGATT6084465CAGATCCAACGGAAAGTCGTTATGATTCAACGACACGGTTTATTTATTGA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:4511845-4511864
ATATTGAGAGAGAGAGAAAAAAGAGAGATT4511845CAGATCCAACGGAAAGTCGTTATGATTCAACCGCACGGTTTAATGAACCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGACTTTCCGTTGGATCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGACTTTCCGTTGGATCTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.807 | 0.799 | search_plus_done; http://172.18.8.135:50400/match?q=ACGACTTTCCGTTGGATCTG&k=0&no_gap=0&offset=0&limit=50
0.934 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=CAGATCCAACGGAAAGTCGT&k=0&no_gap=0&offset=0&limit=35
0.939 | 0.005 | cgi_end;

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