GGGenome | Results

2025-04-09 00:09:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Mdlr7001H09.g1 Apple_EST_Mdlr Malus domestica cDNA similar to ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase) [Arabidopsis thaliana] emb|CAA66821.1| alpha-mannosidase [Arabidopsis th
DT001709.1:223-242

GCCCTCAAAACGCAACTCCGATGCAATTGT223ACGAGAGGCACAAAACCTTCATTTTCACGAACCATACATACGGAGGTGAT

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:34424645-34424664

GCCCTCAAAACGCAACTCCGATGCAATTGT34424645ACGAGAGGCACAAAACCTTCATTTTCACGAACCATACATACGGAGGTGAT

Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:33702441-33702460

GCCCTCAAAACGCAACTCCGATGCAATTGT33702441ACGAGAGGCACAAAACCTTCATTTTCACGAACCATACATACGGAGTTGAT

Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:34916631-34916650

GCCCTCAAAACGCAACTCCGATGCAATTGT34916631ACGAGAGGCACAAAACCTTCATTTTCACGAACCATACATACGGAGGTGAT

Mdfw2017m02.y1 Mdfw Malus domestica cDNA clone Mdfw2017m02 5' similar to TR:P94078 P94078 ALPHA-MANNOSIDASE, mRNA sequence.
CN490636.1:447-466

ATCACCTCCGTATGTATGGTTCGTGAAAAT447GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGA

fl_08H04 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255031.1:264-283

ATCACCTCCGTATGTATGGTTCGTGAAAAT264GAAGGTTTTGTGCCTCTCGT

Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:229998-230017

ATCACCTCCGTATGTATGGTTCGTGAAAAT229998GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGAC

Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:276531-276550

ATCACCTCCGTATGTATGGTTCGTGAAAAT276531GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGGC

Malus domestica genome assembly, chromosome: 9.
OU696685.1:275021-275040

ATCACCTCCGTATGTATGGTTCGTGAAAAT275021GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGGC

Malus domestica genome assembly, chromosome: 9.
OU744961.1:282609-282628

ATCACCTCCGTATGTATGGTTCGTGAAAAT282609GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGGC

Malus domestica genome assembly, chromosome: 9.
OU744999.1:273242-273261

ATCACCTCCGTATGTATGGTTCGTGAAAAT273242GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGGC

Malus x robusta genome assembly, chromosome: 8.
OY720332.1:264191-264210

ATCACCTCCGTATGTATGGTTCGTGAAAAT264191GAAGGTTTTGTGCCTCTCGTACAATTGCATCGGAGTTGCGTTTTGAGGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.140 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=ACGAGAGGCACAAAACCTTC&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.150 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGTTTTGTGCCTCTCGT&k=0&no_gap=0&offset=0&limit=46
0.295 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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