GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:42:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene19218_NK1 mRNA sequence.
JV415770.1:1669-1688
CGTAAACCCGATGTAGGTACGGCTTTTGTG1669ACGAGGGCTCAGAGAAACAAGCAAGTAGCAAGCAAAGAAGCCCTTTCCTT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34992379-34992398
GGGATACCCGATGTAGGTACGGCTTTTGTG34992379ACGAGGGCTCAGAGAAACAAGCAAGTAGCAAGCAAAGAAGCCCTTTTCTT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:38698491-38698510
GGGATACCCGATGTAGGTACGGCTTTTGTG38698491ACGAGGGCTCAGAGAAACAAGCAAGTAGCAAGCAAAGAAGCCCTTTCCTT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:38701565-38701584
GGGGTACCCGATGTAGGTATGGCTTTTGTG38701565ACGAGGGCTCAGAGAAACAAGCAAGTAGCAAGCAAAGAAGCCCTTTCCTT
Laspeyria flexula genome assembly, chromosome: 21.
LR989970.1:12552616-12552635
AACGACTTAGTCATTCCGAGGGCTGTCTGG12552616ACGAGGGCTCAGAGAAACAAAGGAGTTAATTTTGTTAGCTTTATTTTGTA
Lagria hirta genome assembly, chromosome: 1.
OX375794.1:40433968-40433987
GATAGAGTTATTTCTGTAGATTCTTGGTTT40433968ACGAGGGCTCAGAGAAACAAAAAAAATGTAGAAATACTGAAACGTAAAAC
Meiosimyza decipiens genome assembly, chromosome: 3.
OY804260.1:49213400-49213419
GAAATGAGTTGTATATCATTTAGACGGGCT49213400ACGAGGGCTCAGAGAAACAAAAAGTCTTTTTTCGGCAAATCGAATTTTAG
Antiaris toxicaria isolate JCLG002 chromosome 5.
CP141157.1:33315600-33315619
CTCTTTTACTTCCTTTTTAGCTTCTATTCA33315600TTGTTTCTCTGAGCCCTCGTCCTATAAAGAGGCTGTTTGTGATCCACTTT
Antiaris toxicaria isolate JCLG002 chromosome 5.
CP141170.1:32311440-32311459
CTCTTTTACTTCCTTTTTAGCTTATGTTCA32311440TTGTTTCTCTGAGCCCTCGTCCTATAGAGAGGTTGTTTGTGATCCACTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGAGGGCTCAGAGAAACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGAGGGCTCAGAGAAACAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.135 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=ACGAGGGCTCAGAGAAACAA&k=0&no_gap=0&offset=0&limit=50
0.169 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTTTCTCTGAGCCCTCGT&k=0&no_gap=0&offset=0&limit=43
0.170 | 0.001 | cgi_end;

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