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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-13 02:32:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BNSCS3CT_UP_035_A09_12JAN2005_079 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE467606.1:384-403
GATGCTTGGTCAGAGCACAAACGCTGAGTC384ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
BNSCS2CT_UP_094_B12_20APR2007_094 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV022613.1:381-400
GATGCTTGGTCAGAGCACAAACGCTGAGTC381ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
BNSCS2CT_UP_110_B10_20APR2007_078 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV023785.1:617-636
GATGCTTGGTCAGAGCACAAACGCTGAGTC617ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTC
BNSCS2CT_UP_123_B08_21APR2007_062 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV024690.1:704-723
GATGCTTGGTCAGAGCACAAACGCTGAGTC704ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGGCGTTCAG
BNSCS2CT_UP_273_D09_04MAY2007_073 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV035665.1:693-712
GATGCTTGGTCAGAGCACAAACGCTGAGTC693ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTT
BNSCS3CT_UP_258_D11_19MAY2007_089 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV057367.1:553-572
GATGCTTGGTCAGAGCACAAACGCTGAGTC553ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
BNSCS5CT_UP_082_A10_29MAY2007_080 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV083437.1:252-271
GATGCTTGGTCAGAGCACAAACGCTGAGTC252ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
RS2A368TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW722729.1:720-739
GATGCTTGGTCAGAGCACAAACGCTGAGTC720ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
RS2A368TV RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW722730.1:721-740
ATGCTTGGGTCAGAGCACAAACGCTGAGTC721ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGGCGTTTCT
RR2FU88TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD544275.1:720-739
GATGCTTGGTCAGAGCACAAGCGCTGAGTC720ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCT
TSA: Raphanus sativus RS23517 mRNA sequence.
JT808064.1:600-619
GATGCTTGGTCAGAGCACAAGCGCTGAGTC600ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:7295836-7295855
GATGCTTGGTCAGAGCACAAACGCTGAGTC7295836ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:6061994-6062013
GATGCTTGGTCAGAGCACAAACGCTGAGTC6061994ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
Brassica rapa genome, scaffold: A06.
LR031569.1:6057398-6057417
GATGCTTGGTCAGAGCACAAACGCTGAGTC6057398ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:31122678-31122697
GATGCTTGGTCAGAGCACAAACGCTGAGTC31122678ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:31384583-31384602
GATGCTTGGTCAGAGCACAAGCGCTGAGTC31384583ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:6889536-6889555
GATGCTTGGTCAGAGCACAAACGCTGAGTC6889536ACGCCTCATTAACTTCACCGGTTTAGCTATTCTACTCTTTGGCGTTTCAG
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:3699177-3699196
GATGCTTGGTCAGAGCACAAACGCTGAGTC3699177ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:3961082-3961101
GATGCTTGGTCAGAGCACAAGCGCTGAGTC3961082ACGCCTCATTAACTTCACCGGCTTAGCCATTTTACTCTTTGGCGTTTCTG
Logfia minima genome assembly, chromosome: 10.
OY992772.1:17781970-17781989
CCTTGTTTAACATCTCATCACGTAACTTAA17781970ACGCCTCATTAACTTCACCGGCAGATGATAAAGCATGAATTAGGGTACAA
RR3A136JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543479.1:238-257
CAGAAACGCCAAAGAGTAAAATGACTAAGC238CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RR4CU58JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX777443.1:265-284
CAGAAACGCCAAAGAGTAAAATGGCTAAGC265CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RS2BI49JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX898692.1:320-339
CAGAAACGCCAAAGAGTAAAATGGCTAAGC320CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RS2E868JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936332.1:220-239
CAGAAACGCCAAAGAGTAAAATGGCTAAGC220CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGCGCTCTGACCAAGCATC
RR2FU88JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD539924.1:265-284
CAGAAACGCCAAAGAGTAAAATGGCTAAGC265CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RS2F223JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573610.1:265-284
CAGAAACGCCAAAGAGTAAAATGGCTAAGC265CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RS3EI19JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD581184.1:247-266
CAGAAACGCCAAAGAGTAAAATGGCTAAGC247CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGGCCAAGCATC
RS3G373JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD951116.1:325-344
CAGAAACGCCAAAGAGTAAAATGGCTAAGC325CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
RS3GZ65JQB RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD953385.1:195-214
CAGAAACGCCAAAGAGTAAAATGGCTAAGC195CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
0244066 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO930553.1:289-308
CTGAAACGCCAAAGAGTAGAATAGCTAAAC289CGGTGAAGTTAATGAGGCGTGACTCAGCGTTTGTGCTCTGACCAAGCATC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_19149.
FX664723.1:190-209
CAGAAACGCCAAAGAGTAAAATGGCTAAGC190CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_63144.
FX762484.1:5-24
AAGC5CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_79390.
FX791637.1:190-209
CAGAAACGCCAAAGAGTAAAATGGCTAAGC190CGGTGAAGTTAATGAGGCGTGACTCAGCGCTTGTGCTCTGACCAAGCATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
AC189499.2:2618-2637
CTGAAACGCCAAAGAGTAGAATAGCTAAAC2618CGGTGAAGTTAATGAGGCGTGACTCAGCGTTTGTGCTCTGACCAAGCATC
Epirrhoe tristata genome assembly, chromosome: 28.
OX596164.1:2488081-2488100
TCCTGTGAAGATAACGCCAGGAGTTGTGGC2488081CGGTGAAGTTAATGAGGCGTTGCAACAACAGTTGAAGGTTCTGAGCTGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGCCTCATTAACTTCACCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGCCTCATTAACTTCACCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.013 | 1.004 | search_plus_done; http://172.18.8.135:50400/match?q=ACGCCTCATTAACTTCACCG&k=0&no_gap=0&offset=0&limit=50
1.963 | 0.951 | search_minus_done; http://172.18.8.135:50400/match?q=CGGTGAAGTTAATGAGGCGT&k=0&no_gap=0&offset=0&limit=30
1.973 | 0.010 | cgi_end;

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