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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 08:22:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
AP005454.4:89324-89343
GATACATAGCCAGAAGTTAGCTTTTTTAGG89324ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
AP014963.1:3142182-3142201
GATACATAGCCAGAAGTTAGCTTTTTTAGG3142182ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 7.
AP027391.1:3213274-3213293
AGATACATAGCCAGAAGTTAGCTTTTTTGG3213274ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
CP012615.1:2893443-2893462
AGATACATAGCCAGAAGTTAGCTTTTTTGG2893443ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Indica Group cultivar Shuhui498 chromosome 7, partial sequence.
CP018163.1:3031298-3031317
AGATACATAGCCAGAAGTTAGCTTTTTTGG3031298ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Indica Group cultivar Minghui 63 chromosome 7.
CP054682.1:3025321-3025340
AGATACATAGCCAGAAGTTAGCTTTTTTGG3025321ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 7.
CP056058.1:3344704-3344723
AGATACATAGCCAGAAGTTAGCTTTTTTGG3344704ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 2.
CP101142.1:2995799-2995818
AGATACATAGCCAGAAGTTAGCTTTTTTGG2995799ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 7.
CP132241.1:3202046-3202065
GATACATAGCCAGAAGTTAGCTTTTTTAGG3202046ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa indica subgroup cultivar ZH8015 chromosome 07.
CP141114.1:3126913-3126932
AGATACATAGCCAGAAGTTAGCTTTTTTGG3126913ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Oryza sativa genome assembly, chromosome: 7.
OX637252.1:2684488-2684507
AGATACATAGCCAGAAGTTAGCTTTTTTGG2684488ACGGAAGGAATACGTCTGTAGGATTATTATTATTATTATTATTATTATTA
Sequence 82753 from patent US 7365185.
EA703874.1:9765-9784
TAATAATAATAATAATAATAATAATAATCC9765TACAGACGTATTCCTTCCGTCCTAAAAAAGCTAACTTCTGGCTATGTATC
Sequence 82753 from patent US 7790958.
GX568728.1:9765-9784
TAATAATAATAATAATAATAATAATAATCC9765TACAGACGTATTCCTTCCGTCCTAAAAAAGCTAACTTCTGGCTATGTATC
Sequence 8682 from patent US 7868149.
GX912774.1:9765-9784
TAATAATAATAATAATAATAATAATAATCC9765TACAGACGTATTCCTTCCGTCCTAAAAAAGCTAACTTCTGGCTATGTATC
Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1425_E04, WORKING DRAFT SEQUENCE, 1 ordered pieces.
AP003955.1:74956-74975
TAATAATAATAATAATAATAATAATAATCC74956TACAGACGTATTCCTTCCGTCCTAAAAAAGCTAACTTCTGGCTATGTATC
Oryza sativa microsatellite MRG4711 containing (AAT)X24, closest to marker S12540, genomic sequence.
AY022386.1:175-194
TAATAATAATAATAATAATAATAATAATCC175TACAGACGTATTCCTTCCGTCCTAAAAAAGCTAACTTCTGGCTATGTATC
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:29242791-29242810
AGATCTTAAAATCTCCCTACCTCCCTCGTT29242791TACAGACGTATTCCTTCCGTATGGTTGTTGGCATTTAAGAACGTTGAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGGAAGGAATACGTCTGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGGAAGGAATACGTCTGTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.372 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=ACGGAAGGAATACGTCTGTA&k=0&no_gap=0&offset=0&limit=50
0.537 | 0.165 | search_minus_done; http://172.18.8.135:50400/match?q=TACAGACGTATTCCTTCCGT&k=0&no_gap=0&offset=0&limit=39
0.540 | 0.004 | cgi_end;

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