GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 11:39:20, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Prunus padus genome assembly, chromosome: 1.
OZ060511.1:19302252-19302276
ATGGTGGTAAAGGAAGAGAAGAGGAACAAG19302252ACGGTATGTCCGTACACTCTCCATGCAAAGCTCCCCCTTCCTCTGCTTCTTCTCT
Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:24391379-24391403
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG24391379CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTATCACCAT
Prunus speciosa IZO01 DNA, chromosome 1, sequence.
AP029589.1:30669470-30669494
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG30669470CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus speciosa IZO01 DNA, chromosome 1.
AP038355.1:30539508-30539532
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG30539508CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus speciosa IZO01 DNA, chromosome 1.
AP038363.1:29696561-29696585
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG29696561CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus dulcis genome assembly, chromosome: 1.
OZ022197.1:29456111-29456135
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG29456111CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTATCACCAT
Prunus dulcis genome assembly, chromosome: 1.
OZ022206.1:29539452-29539476
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG29539452CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTATCACCAT
Prunus armeniaca genome assembly, chromosome: 1.
OZ046360.2:28463103-28463127
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG28463103CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus padus genome assembly, chromosome: 5.
OZ060515.1:24532324-24532348
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG24532324CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus armeniaca genome assembly, chromosome: 1.
OZ177837.1:27910261-27910285
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG27910261CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT
Prunus brigantina genome assembly, chromosome: 1.
OZ184542.1:30300308-30300332
AGAGAAGAAGCAGAGGAAGGGGGAGCTTTG30300308CATGGAGAGTGTACGGACATACCGTCTTGTTCCTCTTCTCTTCCTTTACCACCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGGTATGTCCGTACACTCTCCATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGGTATGTCCGTACACTCTCCATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.202 | 0.193 | search_plus_done; http://172.18.8.135:50800/match?q=ACGGTATGTCCGTACACTCTCCATG&k=0&no_gap=0&offset=0&limit=50
0.296 | 0.094 | search_minus_done; http://172.18.8.135:50800/match?q=CATGGAGAGTGTACGGACATACCGT&k=0&no_gap=0&offset=0&limit=49
0.303 | 0.007 | cgi_end;

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