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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 04:38:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mddb5003n19.y1 Mddb Malus domestica cDNA clone Mddb5003n19 5', mRNA sequence.
CO723666.1:1-20
1ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGTGATAGAGGGGAAAT
Pyrus pyrifolia mRNA, clone: NFR6_24_09, 5' end sequence, expressed in fruit.
HX760646.1:70-89
AATTACAGTGGCGGTCGGAAGTGGATCTCT70ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGTATTTTTGCATTTAT
TSA: Pyrus pyrifolia mRNA, contig: contig_10619.
FX429564.1:74-93
AATTACAGTGGCGGTCGGAACTGGATCTCT74ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGTATTTTTGCATTTAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:19831745-19831764
AATTACAGTGGCGGTCGGAACTGGATCTCT19831745ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGGTAAGCTCCTTCAAC
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:19981831-19981850
AATTACAGTGGCGGTCGGAACTGGATCTCT19981831ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGGTAAGCTCCTTCAAC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:18155247-18155266
AATTACAGTGGCGGTCGGAACTGGATCTCT18155247ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGGTAAGCTCCTTCAAC
Malus domestica genome assembly, chromosome: 12.
OU745002.1:19316950-19316969
AATTACAGTGGCGGTCGGAACTGGATCTCT19316950ACGTCCTCGCTCTTCTTTTCCGAAATTGATTAGGGGTAAGCTCCTTCAAC
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:12470407-12470426
GTTGAAGGAGCTTACCCCTAATCAATTTCG12470407GAAAAGAAGAGCGAGGACGTAGAGATCCAGTTCCGACCGCCACTGTAATT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:12534515-12534534
GTTGAAGGAGCTTACCCCTAATCAATTTCG12534515GAAAAGAAGAGCGAGGACGTAGAGATCCAGTTCCGACCGCCACTGTAATT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:12460265-12460284
GTTGAAGGAGCTTACCCCTAATCAATTTCG12460265GAAAAGAAGAGCGAGGACGTAGAGATCCAGTTCCGACCGCCACTGTAATT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:12516899-12516918
GTTGAAGGAGTTTACCCCTAATCAATTTCG12516899GAAAAGAAGAGCGAGGACGTAGAGATCCAGTTCCGACGGCCACTGTAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGTCCTCGCTCTTCTTTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGTCCTCGCTCTTCTTTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.244 | 0.235 | search_plus_done; http://172.18.8.135:50400/match?q=ACGTCCTCGCTCTTCTTTTC&k=0&no_gap=0&offset=0&limit=50
0.267 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=GAAAAGAAGAGCGAGGACGT&k=0&no_gap=0&offset=0&limit=43
0.270 | 0.003 | cgi_end;

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