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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:31:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

127b03 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961755.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
200h06 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963870.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
210c11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN964384.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
3g2w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965417.1:266-285
TCGTGGCAGTGGCACGAACCGCCTGGAGAA266ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0121689 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116377.1:460-479
TCGTGGCAGTGGCACGAACCTCCTGGAGAA460ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0165487 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163917.1:461-480
TCGTGGCAGTGGCACGAACCTCCTGGAGAA461ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0165605 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163962.1:457-476
TCGTGGCAGTGGCACGAACCTCCTGGAGAA457ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0198824 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV185304.1:461-480
TCGTGGCAGTGGCACGAACCGCCTGGAGAA461ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
RS2B193JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW729372.1:424-443
TCGTGACAATGGCACGAACCACCTGGAGAA424ACGTTCAGCTTCACCTTGTGGACAATCACACGCCACAGCTCCATCTCCGA
BR105307 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-26E12 3', mRNA sequence.
EX121477.1:497-516
TCGTGGCAGTGGCACGAACCGCCTGGAGAA497ACGTTCAGCTTCACCTTGTGGACG
RR4EQ46JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553112.1:462-481
TCGTGACAATGGCACGAACCGCCTGGAGAA462ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_25862.
FX733399.1:473-492
TCGTGGCAGTGGCACGAACCGCCTGGAGAA473ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8052.
FX738480.1:515-534
TCGTGACAATGGCACGAACCGCCTGGAGAA515ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Raphanus sativus RS04400 mRNA sequence.
JT788947.1:555-574
TCGTGACAATGGCACGAACCGCCTGGAGAA555ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa subsp. pekinensis GSS, clone KBrH054M11, end read, primer M13(forward).
AJ861903.1:195-214
TCGTGGCAGTGGCACGAACCGCCTGGAGAA195ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
BOGRE18TF BOGR Brassica oleracea genomic clone BOGRE18, genomic survey sequence.
BH449016.1:645-664
TCGTGGCAGTGGCACGAACCGCCTGGAGAA645ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
SIR-49A9JR Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-49A9, genomic survey sequence.
FI811665.1:342-361
TCGTGGCAATGAAACGAACCGCCTGGAGAA342ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCGGTCTCCGA
SIR-66I10TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-66I10, genomic survey sequence.
FI830522.1:141-160
TCGTGGCAATGAAACGAACCGCCTGGAGAA141ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCGGTCTCCGA
HDE291C07.R HDE Setaria viridis genomic 3', genomic survey sequence.
KS147036.1:647-666
TCGCCGCAGTGGAACGACGTGCCGGGCGAC647ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Setaria viridis cultivar ME034v chromosome 7.
CP050801.1:26786985-26787004
TCGCCGCAGTGGAACGACGTGCCGGGCGAC26786985ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:18836106-18836125
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18836106ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:18250660-18250679
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18250660ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:29007672-29007691
TCGTGGCAGTGGCACGAACCGCCTGGAGAA29007672ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa genome, scaffold: A09.
LR031568.1:18399969-18399988
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18399969ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:28924245-28924264
TCGTGGCAGTGGCACGAACCGCCTGGAGAA28924245ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:18728809-18728828
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18728809ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Phragmites australis genome assembly, chromosome: 7.
OY282618.1:32513209-32513228
TCGCTGCAGTGGAACGACGTGCCGGGCGAC32513209ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Cardamine chenopodiifolia genome assembly, chromosome: 32.
OZ000490.1:2278298-2278317
TCGTGGCAATGGAACGAACCACCTGGTGAC2278298ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCAGTCTCCGA
Sequence 20337 from Patent WO2008034648.
FB801064.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 72336 from Patent WO2008034648.
FB853063.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 20337 from Patent EP2090662.
HB671123.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 72336 from Patent EP2090662.
HB723122.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 197426 from Patent EP2090662.
HB848212.1:1165-1184
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1165CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
103A4w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960497.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
127c05w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961769.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
148G02w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963204.1:527-546
TCGGAGATGGAGCTGTGGCGTGTGATCGTC527CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGGCCACA
225d08w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965304.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCANGGCGGTTCGTGCCACTGCCACG
E05_02SC_1BS Brassica napus leaf infected with Sclerotinia sclerotiorum EST library Brassica napus cDNA 5', mRNA sequence.
DV643309.1:133-152
TCGGAGATGGAGCTGTGGCGTGTGATCGTC133CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
0165644 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163998.1:460-479
TCGGAGATGGAGCTGTGGCGTGTGATCGTC460CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
0165768 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV164051.1:461-480
TCGGAGATGGAGCTGTGGCGTGTGATCGTC461CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
BR011660 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-041E07 5', mRNA sequence.
EX027016.1:260-279
TCGGAGATGGAGCTGTGGCGTGTGATCGTC260CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR013035 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-060E10 5', mRNA sequence.
EX028391.1:259-278
TCGGAGATGGAGCTGTGGCGTGTGATCGTC259CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR013041 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-060F07 5', mRNA sequence.
EX028397.1:259-278
TCGGAGATGGAGCTGTGGCGTGTGATCGTC259CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR013966 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-074F07 5', mRNA sequence.
EX029322.1:241-260
TCGGAGATGGAGCTGTGGCGTGTGATCGTC241CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR015536 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-096D10 5', mRNA sequence.
EX030892.1:231-250
TCGGAGATGGAGCTGTGGCGTGTGATCGTC231CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR020351 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-175G02 5', mRNA sequence.
EX035707.1:259-278
TCGGAGATGGAGCTGTGGCGTGTGATCGTC259CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR047857 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-19B03 5', mRNA sequence.
EX063213.1:489-508
TCGGAGATGGAGCTGTGGCGTGTGATCGTC489CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGT
BR107397 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-24G09 5', mRNA sequence.
EX123567.1:488-507
TCGGAGATGGAGCTGTGGCGTGTGATCGTC488CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR108507 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-42F12 5', mRNA sequence.
EX124677.1:390-409
TCGGAGATGGAGCTGTGGCGTGTGATCGTC390CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR108825 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-48C05 5', mRNA sequence.
EX124995.1:593-612
TCGGAGATGGAGCTGTGGCGTGTGATCGTC593CACAAGGTGAAGCTGAACGTTCCTCCAGGGCGGTTCGTGCCACTGCCACG
BR108909 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-50A06 5', mRNA sequence.
EX125079.1:472-491
TCGGAGATGGAGCTGTGGCGTGTGATCGTC472CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR110155 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-11G12 5', mRNA sequence.
EX126325.1:420-439
TCGGAGATGGAGCTGTGGCGTGTGATCGTC420CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR111649 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-30C03 5', mRNA sequence.
EX127819.1:757-776
TCGGAGATGGAGCTGTGGCGTGTGATCGTC757CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR116981 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-30A11 5', mRNA sequence.
EX133151.1:552-571
TCGGAGATGGAGCTGTGGCGTGTGATCGTC552CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR120750 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-77F07 5', mRNA sequence.
EX136920.1:374-393
TCGGAGATGGAGCTGTGGCGTGTGATCGTC374CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3482.
FX658237.1:1418-1437
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1418CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCATTGTCACGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_12921.
FX696674.1:1348-1367
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1348CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
TSA: Chorispora bungeana CK_00985 mRNA sequence.
JW989051.1:1341-1360
TCCGAGACAGAGCTATGGCGCATGATCGTC1341CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
TSA: Chorispora bungeana T_40201 mRNA sequence.
KA077031.1:1359-1378
TCCGAGACAGAGCTATGGCGCATGATCGTC1359CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:39784724-39784743
TCGGAGATGGAGCTGTGGCGTGTGATCGTC39784724CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Brassica oleracea var. gemmifera ACC synthase mRNA, partial cds.
EU921648.1:999-1018
TCGGAGATGGAGCTGTGGCGTGTGATCGTC999CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTTGTGCCACTGCCACGA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:57315906-57315925
TCGGAGACGGAGCTATGGCGTGTGATCGTC57315906CACAAGGTGAAGCTGAACGTTTCTCCAGGTGGTTCGTTCCATTGCCACGA
Phragmites australis genome assembly, chromosome: 13.
OY282624.1:26239816-26239835
GCGGAGCTGGAGCTGTGGCGGGTAATCATA26239816CACAAGGTGAAGCTGAACGTATCGCCGGGCACTTCGTTCCACTGCCGCGA
Barbarea vulgaris genome assembly, chromosome: 8.
OY763894.1:20202614-20202633
TCGGAGACTGAGCTATGGCGTGTGATCGTC20202614CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
Cardamine chenopodiifolia genome assembly, chromosome: 8.
OZ000466.1:13272584-13272603
TCGGAGACTGAGCTATGGCGTGAGATTGTC13272584CACAAGGTGAAGCTGAACGTATCTCCGGGTGGTTCGTTCCATTGCCATGA
Cardamine chenopodiifolia genome assembly, chromosome: 24.
OZ000482.1:12964050-12964069
TCGGAGACCGAGCTATGGCGTGTGATCGTC12964050CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCATTCCATTGCCACGA
B.oleracea mRNA for ACC synthase.
X82273.1:1231-1250
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1231CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGTTCAGCTTCACCTTGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGTTCAGCTTCACCTTGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.802 | 0.793 | search_plus_done; http://172.18.8.135:50400/match?q=ACGTTCAGCTTCACCTTGTG&k=0&no_gap=0&offset=0&limit=50
2.253 | 1.451 | search_minus_done; http://172.18.8.135:50400/match?q=CACAAGGTGAAGCTGAACGT&k=0&no_gap=0&offset=0&limit=22
2.278 | 0.025 | cgi_end;

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