GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:46:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:196656032-196656049
TTTCGGATATCCAACCAATATCATTACACG196656032ACGTTCGGCCAAATAATGTTAGAAATAACCATAACATCATAATCATAT
Pseudoniphargus daviui complete mitochondrial genome.
FR872383.2:11272-11289
AAAAAACTCTTCATTTTCAGGAGGCCCTAT11272ACGTTCGGCCAAATAATGCTATCACAATATTATAAAAAAACACCTTTA
Conomelus anceps genome assembly, chromosome: 5.
OX418220.1:8386041-8386058
ACGTTGAAGATGAGATTCAATAACTCGAAA8386041ACGTTCGGCCAAATAATGTGAGTACATTTATTATATATTCACAGTTTA
Horisme vitalbata genome assembly, chromosome: 2.
OX638090.1:19570411-19570428
ATGCTATCTCGATCATTTTATTTCGTTTGA19570411ACGTTCGGCCAAATAATGGTTTGTTTGTTGTGATCATTAGCGCTAGCT
Stenurella melanura genome assembly, chromosome: 1.
OY757309.1:181214093-181214110
GGATATTTGACTGGTCCCAAGAATTTTTGT181214093ACGTTCGGCCAAATAATGTCAACTGCGATGTAAAATTGGAGTGCGTAA
Diplosoma virens genome assembly, chromosome: 1.
OY796880.1:39976227-39976244
AGAACACTATTCATTTGAGTGCATTGTCAA39976227ACGTTCGGCCAAATAATGCATGGGAACAAATAAGATCAATTTTTAATC
Ciona intestinalis cDNA, clone:rcicl48i23, 3' end, single read.
AV889671.1:58-75
TCAATTATTGGTACATGGAAAATAATCCGA58CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
Ciona intestinalis cDNA, clone:rcieg063h12, 3' end, single read.
BW074666.1:71-88
CAAATTATTGGTACATGGAAAATAATCCGA71CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
Ciona intestinalis cDNA, clone:rcicl062a08, 3' end, single read.
BW107158.1:57-74
GTNAATATTGGTACATGGAAAATAATCCGA57CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTNAT
Ciona intestinalis cDNA, clone:rcicl062c03, 3' end, single read.
BW107194.1:18-35
CATGGAAAATAATCCGA18CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
Ciona intestinalis cDNA, clone:cima851h15, 3'end, single read.
BW425355.1:57-74
TCAAATTATGGTACATGGAAAATAATCCGA57CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
XABT83971.rev Gateway compatible cien cDNA library, Ciona intestinalis mixed embryonic stages (Egg to Neurula) Ciona intestinalis cDNA clone cien83971 3', mRNA sequence.
FF786760.1:96-113
CAAATTATTGGTACATGGAAAATAATCCGA96CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
XABT90568.rev Gateway compatible cien cDNA library, Ciona intestinalis mixed embryonic stages (Egg to Neurula) Ciona intestinalis cDNA clone cien90568 3', mRNA sequence.
FF796729.1:107-124
CAAATTATTGGTACATGGAAAATAATCCGA107CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
XABT119708.g1 Gateway compatible cien cDNA library, Ciona intestinalis mixed embryonic stages (Egg to Neurula) Ciona intestinalis cDNA clone cien119708 3', mRNA sequence.
FK053109.1:96-113
CAAATTATTGGTACATGGAAAATAATCCGA96CATTATTTGGCCGAACGTTCAGTTAAAAATACAAAGATTATAATTCAT
Malus x domestica Sz mRNA for Sz-RNase, complete cds.
AB062100.1:279-296
CAAGATAGGAAATCTCCAAGCACAGTTGGA279CATTATTTGGCCGAACGTATACGATCGAACTAATAATGTAGGCTTTTG
Pyrus communis gene for Sg-RNase, complete cds.
AB258360.1:2016-2033
TCAGATAGGAAATCTCCAAGCACAGTTGGA2016CATTATTTGGCCGAACGTATATGATCGCACTAATAATGTAGGCTTTTG
Malus x domestica S25-RNase gene for S25-RNase, partial cds.
AB428431.1:2546-2563
TCAGATAGGAAATCTCCAAGCACAGTTGGA2546CATTATTTGGCCGAACGTATACGATCGAACTAATAATGTAGGCTTTTG
Crataegus monogyna isolate CmonS11 putative self-incompatibility protein mRNA, partial cds.
AF504283.1:164-181
GAGGATAACAAATCTCCATGCCGAGTTGGA164CATTATTTGGCCGAACGTGTACGATCGAACCGATAATGCAGGCTTTTG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:71162895-71162912
ATATGATTATGATGTTATGGTTATTTCTAA71162895CATTATTTGGCCGAACGTCGTGTAATGATATTGGTTGGATATCCGAAA
Pyrus x bretschneideri cultivar Xuehuali S39-RNase mRNA, complete cds.
DQ995285.1:307-324
GAAGATAGGAAATCGACGAGCCAAGTTGGA307CATTATTTGGCCGAACGTATTCGATCGAACCGATAATGTGGGCTTTTG
Pyrus communis self-incompatibility associated ribonuclease (S) gene, S10 allele, partial cds.
EF418041.1:1874-1891
TCAGATAGGAAATCTCCAAGCACAGTTGGA1874CATTATTTGGCCGAACGTATATGATCGCACTAATAATGTAGGCTTTTG
Pyrus syriaca S5 RNase gene, partial cds.
EU247101.1:971-988
GATAGATGCATCACTCAAACCCCAGTTGGA971CATTATTTGGCCGAACGTATTCAATCGAGCCGATAATGAAAGCTTCTG
Pyrus x bretschneideri S39-RNase gene, complete cds.
EU336980.1:635-652
TCAGATAGGAAATCGACGAGCCAAGTTGGA635CATTATTTGGCCGAACGTATTCGATCGAACCGATAATGTGGGCTTTTG
Ziziphus jujuba isolate Russia4 S-RNase like protein gene, partial cds.
KM872061.1:210-227
GATGGAGGATGGTCAAATTTTAGATTTAAA210CATTATTTGGCCGAACGT
Malus domestica S-RNase (S) gene, S25 allele, complete cds.
MG598503.1:3961-3978
TCAGATAGGAAATCTCCAAGCACAGTTGGA3961CATTATTTGGCCGAACGTATACGATCGAACTAATAATGTAGGCTTTTG
Beijerinckia indica subsp. indica ATCC 9039, complete genome.
CP001016.1:930812-930829
CTGCGTGCGAGCCCTGCTACGGCCGTCGCC930812CATTATTTGGCCGAACGTGGCTTTTTTGCCTCACGGCACTTCGAGGCG
Luperina testacea genome assembly, chromosome: 1.
OV656756.1:11688921-11688938
CATAATCTTTTTAAACGAATATTTTTAGGG11688921CATTATTTGGCCGAACGTTTATATGTTCGAATTTACAATGGCATACTT
Sarcophaga subvicina genome assembly, chromosome: 3.
OW388082.2:110889092-110889109
TACAATATTTTCTAATTCATTTTTGCTCTG110889092CATTATTTGGCCGAACGTTGTGCTTAATTTATATCTGTACAGGTCACC
Calliphora vomitoria genome assembly, chromosome: 1.
OW818029.2:11689021-11689038
AATGCAAATCGTTTTTAACATGTATTATTA11689021CATTATTTGGCCGAACGTTGTCTGAAGAAGCTAAAACCAAATCAATCC
Hydrotaea diabolus genome assembly, chromosome: 4.
OY740719.1:118855262-118855279
ACTGTTTGGTGCGGTTTATGGGTTGGCAGG118855262CATTATTTGGCCGAACGTCTTCGAAAATGAGGTCGCCTTAACCGATAC
Pollenia griseotomentosa genome assembly, chromosome: 4.
OZ007563.1:93910730-93910747
AATTTTTATTAGTTTAAACTGGCCTTGAAA93910730CATTATTTGGCCGAACGTTTTTATAAAAAAGTGTTAGGGTTTTATGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACGTTCGGCCAAATAATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGTTCGGCCAAATAATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=ACGTTCGGCCAAATAATG&k=0&no_gap=0&offset=0&limit=50
0.639 | 0.540 | search_minus_done; http://172.18.8.135:50400/match?q=CATTATTTGGCCGAACGT&k=0&no_gap=0&offset=0&limit=44
0.655 | 0.016 | cgi_end;

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