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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 22:23:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRCS04_2_026H11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_H11, mRNA sequence.
CV887067.1:400-419
CAAACCCGCTGAACTGTCTCACAGCCGCGT400ACGTTGGTTTCCATTGTTGGAGATGGAGGCCTTTTGCTGGAGGTGGGTTG
UCRCS08_32G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-32G05-N10-1-5.b, mRNA sequence.
CX073381.1:404-423
CAAACCCGCTGAACTGTCTCACAGCCGCGT404ACGTTGGTTTCCATTGTTGGAGATGGAGGCCTTTTGCTGGAGGTGGGTTG
UCRCA01_06O05_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0006O05, mRNA sequence.
DN625757.1:388-407
CAAACCCGCTGAACTGTCTCACAGCCGCGT388ACGTTGGTTTCCATTGTTGGAGATGGAGGCCTTTTGCTGGAGGTGGGTTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR722616.1:82943614-82943633
CTTACCATTGTAACCCCTGTTTTTCTTCTG82943614ACGTTGGTTTCCATTGTTGGTGTTGGTATTGGCGACTAAATCCGAAGATT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR812970.1:82943614-82943633
CTTACCATTGTAACCCCTGTTTTTCTTCTG82943614ACGTTGGTTTCCATTGTTGGTGTTGGTATTGGCGACTAAATCCGAAGATT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR865395.1:76759821-76759840
CTTACCATTGTAACCCCTGTTTTTCTTCTG76759821ACGTTGGTTTCCATTGTTGGTGTTGGTATTGGCGACTAAATCCGAAGATT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR890096.1:85303490-85303509
CTTACCATTGTAACCCCTGTTTTTCTTCTG85303490ACGTTGGTTTCCATTGTTGGTGTTGGTATTGGCGACTAAATCCGAAGATT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:52625129-52625148
CAAACCCGCTGAACTGTCTCACAGCCGCGT52625129ACGTTGGTTTCCATTGTTGGAGATGGAGGCCTTTTGCTGGAGGTGGGTTG
GF-FV-P4C11 Marsh grapefruit young flavedo Citrus x paradisi cDNA, mRNA sequence.
BE208966.1:467-486
CAACCCACCTCCAGCAAAAGGCCTCCATCT467CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
USDA-FP_00418 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00418 5', mRNA sequence.
BQ623327.1:433-452
CAACCCACCTCCAGCAAAAGGGCTCCATCT433CCAACAATGGAAACCAACGTACGCCGCTGGGAGACAGTCCA
CGF1004529_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_C10 5', mRNA sequence.
CK932806.1:496-515
CAACCCACCTCCAGCAAAAGGCCTCCATCT496CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CGF1004260_G12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_G12 5', mRNA sequence.
CK934308.1:495-514
CAACCCACCTCCAGCAAAAGGCCTCCATCC495CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CGF1004517_F02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F02 5', mRNA sequence.
CK936828.1:496-515
CAACCCACCTCCAGCAAAAGGCCTCCATCT496CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CGF1004514_C03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_C03 5', mRNA sequence.
CK937095.1:492-511
CAACCCACCTCCAGCAAAAGGCCTCCATCT492CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
UCRCS04_2_026H11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_H11, mRNA sequence.
CV887066.1:204-223
CAACCCACCTCCAGCAAAAGGCCTCCATCT204CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
UCRCS08_32G05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-32G05-N10-1-4.g, mRNA sequence.
CX073382.1:468-487
CAACCCACCTCCAGCAAAAGGCCTCCATCT468CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
C02002D02SK IF1 Citrus clementina cDNA clone C02002D02, mRNA sequence.
CX288609.1:441-460
CAACCCACCTCCAGCAAAAGGCCTCCATCT441CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
C07012G02SK SaltLeaf1 Citrus clementina cDNA clone C07012G02, mRNA sequence.
CX300655.1:139-158
CAACCCACCTCCAGCAAAAGGCCTCCATCT139CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
UCRCA01_05O14_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0005O14, mRNA sequence.
DN625057.1:474-493
CAACCCACCTCCAGCAAAAGGCCTCCATCT474CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
USDA-FP/ARO_14859 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-19_B09 5', mRNA sequence.
DN959029.1:461-480
CAACCCACCTCCAGCAAAAGGCCTCCATCT461CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
USDA-FP_16300 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_H09 5', mRNA sequence.
DR908172.1:465-484
CAACCCACCTCCAGCAAAAGGCCTCCATCT465CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS00-C3-701-035-E09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704695.1:494-513
CAACCCACCTCCAGCAAAAGGCCTCCATCT494CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS00-C3-703-062-C11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY723705.1:491-510
CAACCCACCTCCAGCAAAAGGCCTCCATCT491CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS00-C3-703-103-G05-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY727639.1:347-366
CAACCCACCTCCAGCAAAAGGCCTCCATCT347CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS00-C3-703-108-D07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY728169.1:336-355
CAACCCACCTCCAGCAAAAGGCCTCCATCT336CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS00-C5-003-093-G12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY751605.1:200-219
CAACCCACCTCCAGCAAAAGGCCTCCATCT200CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CS13-C1-001-030-B06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY758010.1:376-395
CAACCCACCTCCAGCAAAAGGCCTCCATCT376CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
CA26-C1-002-045-G11-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY846601.1:468-487
CAACCCACCTCCAGCAAAAGGCCTCCATCT468CCAACAATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828091.1:425048726-425048745
AATCTTCGGATTTAGTCGCCAATACCAACA425048726CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX459974.1:428758321-428758340
AATCTTCGGATTTAGTCGCCAATACCAACA428758321CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460051.1:412227839-412227858
AATCTTCGGATTTAGTTGCCAATACCAACA412227839CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460093.1:424051414-424051433
AATCTTCGGATTTAGTCGCCAATACCAACA424051414CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590738.1:420979298-420979317
AATCTTCGGATTTAGTCGCCAATACCAACA420979298CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590752.1:431621510-431621529
AATCTTCGGATTTAGTTGCCAATACCAACA431621510CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638802.1:411927856-411927875
AATCTTCGGATTTAGTCGCCAATACCAACA411927856CCAACAATGGAAACCAACGTCAGAAGAAAAACATGGGATATAGTGGTAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGTTGGTTTCCATTGTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGTTGGTTTCCATTGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.300 | 0.291 | search_plus_done; http://172.18.8.135:50400/match?q=ACGTTGGTTTCCATTGTTGG&k=0&no_gap=0&offset=0&limit=50
1.339 | 1.039 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACAATGGAAACCAACGT&k=0&no_gap=0&offset=0&limit=42
1.357 | 0.018 | cgi_end;

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