GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 05:01:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141955.1:2145860-2145883
GAAAGACTGACAAGTAAATGATGTTAACTT2145860ACTACAAGCAACTTCCGAGTTGATGGAGCTCGTGCCATGGATGAAGCAGCTGCT
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:2138416-2138439
GAAAGACTGACAAGTAAATGATGTTAACTT2138416ACTACAAGCAACTTCCGAGTTGATGGAGCTCGTGCCATGGATGAAGCAGCTGCT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:2476085-2476108
AAAAGACTGACAAGTAAATGATGTTAACTT2476085ACTACAAGCAACTTCCGAGTTGATGGAGCTCGTGCCATGGATGAAGCAGCTGCT
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:2388722-2388745
GAAAGACTGACAAGTAAATGATGTTAACTT2388722ACTACAAGCAACTTCCGAGTTGATGGAGCTCGTGCCATGGATGAAGCAGCTGCT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:1660492-1660515
AAAAGACTGACAAGTAAATGATGTTAACTT1660492ACTACAAGCAACTTCCGAGTTGATGGAGCTCGTGCCATGGATGAAGCAGCTGCT
TSA: Pyrus communis mRNA, contig: lc49298.
FX655499.1:38-61
CAGCTGCTTCATCCATGGCACGAGGCTCCG38ATCAACTCGGAAGTTGCTTGTAGTCAACAGAATTTATCNGGAGCTCTAAGCAAG
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141912.1:34028933-34028956
AGCAGCTGCTTCATCCATGGCACGAGCTCC34028933ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:36351404-36351427
AGCAGCTGCTTCATCCATGGCACGAGCTCC36351404ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:34658140-34658163
AGCAGCTGCTTCATCCATGGCACGAGCTCC34658140ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:32333813-32333836
AGCAGCTGCTTCATCCATGGCACGAGCTCC32333813ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:34428922-34428945
AGCAGCTGCTTCATCCATGGCACGAGCTCC34428922ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus domestica genome assembly, chromosome: 3.
OU696679.1:35849092-35849115
AGCAGCTGCTTCATCCATGGCACGAGCTCC35849092ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus domestica genome assembly, chromosome: 3.
OU744544.1:35546003-35546026
AGCAGCTGCTTCATCCATGGCACGAGCTCC35546003ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus domestica genome assembly, chromosome: 3.
OU744955.1:34903347-34903370
AGCAGCTGCTTCATCCATGGCACGAGCTCC34903347ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus domestica genome assembly, chromosome: 3.
OU744993.1:35607325-35607348
AGCAGCTGCTTCATCCATGGCACGAGCTCC35607325ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Malus x robusta genome assembly, chromosome: 6.
OY720330.1:34969605-34969628
AGCAGCTGCTTCATCCATGGCACGAGCTCC34969605ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:23607928-23607951
AGCAGCTGCTTCATCCATGGCACGAGCTCC23607928ATCAACTCGGAAGTTGCTTGTAGTAAGTTAACATCATTTACTTGTCAGTCTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTACAAGCAACTTCCGAGTTGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTACAAGCAACTTCCGAGTTGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.144 | 0.135 | search_plus_done; http://172.18.8.135:50400/match?q=ACTACAAGCAACTTCCGAGTTGAT&k=0&no_gap=0&offset=0&limit=50
0.359 | 0.214 | search_minus_done; http://172.18.8.135:50400/match?q=ATCAACTCGGAAGTTGCTTGTAGT&k=0&no_gap=0&offset=0&limit=45
0.367 | 0.008 | cgi_end;

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