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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-01-10 01:52:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Vitis vinifera contig VV78X114542.11, whole genome shotgun sequence.
AM431974.2:11444-11467
GAGTTGTAGGATTGATCGGATTGAAGACTG11444ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Prunus dulcis DNA, pseudomolecule Pd06.
AP019302.1:20065777-20065800
AAAGATTGATGGTGATCAGATTGGAGACTG20065777ACTAGTCTAAACAAGGTATCCATTTAACCTGCAAAGACCCACATCAATAAACTT
Vitis rotundifolia cultivar Noble chromosome 20.
CP092945.1:3751333-3751356
GAGTTGTAGGATTGATCGGATTGAAGGCTG3751333ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTG
Glycine max cultivar Williams 82 chromosome 17.
CP126442.1:13971981-13972004
TGTTGTGGTTGTTGCTGTTGATGAAAACTT13971981ACTAGTCTAAACAAGGTATCCATTTAACCCACATCAAATAAACAATGTGAGTGT
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:26024271-26024294
GAGTTGTAGGATTGATCGGATTGAAGACTG26024271ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:26470874-26470897
GAGTTGTAGGATTGATCGGATTGAAGACTG26470874ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:26956403-26956426
GAGTTGTAGGATTGATCGGATTGAAGACTG26956403ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Vitis vinifera cv. PN40024, annotated scaffold_129.assembly12x.
FN596246.1:21389-21412
GAGTTGTAGGATTGATCGGATTGAAGACTG21389ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Vitis vinifera cv. PN40024, annotated scaffold_129.assembly12x.
FN596246.1:22140-22163
GAGTTGTAGGATTGATCGGATTGAAGACTG22140ACTAGTCTAAACAAGGTATCCATTTAACCACAGACCCACATCAAAATAACCCTT
Spergularia marina genome assembly, chromosome: 7.
OY804550.1:24461807-24461830
TGTTTTGATGAGTGTGGTTGTTGGAAACTC24461807ACTAGTCTAAACAAGGTATCCATTTAACCCCAACCATGTAAACTTATGACCTTA
Viola odorata genome assembly, chromosome: 4.
OY829540.1:63985059-63985082
TGGAGTTGCTGTTGCTGGTGTTGGAGAGTT63985059ACTAGTCTAAACAAGGTATCCATTTAACCAAAACTTTTTAGAAAAGAAGATACC
JP 2010512141-A/207: TRANSCRIPTION FACTORS.
FW351825.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 215 from patent US 7507875.
GP284156.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 61954 from patent US 7569389.
GP694194.1:60-83
ACACTCACATTGTTTATTTGATGTGGGTTA60AATGGATACCTTGTTTAGACTAGTAAGTTTTCATCAACAGCAACAACCACAACA
Sequence 215 from patent US 8110723.
GZ147182.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 215 from Patent EP1639089.
HH970477.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 215 from patent US 8962947.
HK479066.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 321 from patent US 9040774.
HK726026.1:78-101
ACACTCACATTGTTTATTTGATGTGGGTTA78AATGGATACCTTGTTTAGACTAGTAAGTTTTCATCAACAGCAACAACCACAACA
JP 2011087577-A/207: TRANSCRIPTION FACTORS.
HV336113.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
JP 2011229530-A/207: TRANSCRIPTION FACTORS.
HV544851.1:213-236
ATTTTGATGTGGTCATTTGGAAGAGGCTTG213AATGGATACCTTGTTTAGACTAGTGAGCCTTCAATCCTCCGATCAGTCCTTCAA
Sequence 321 from Patent EP2304030.
JA866756.1:78-101
ACACTCACATTGTTTATTTGATGTGGGTTA78AATGGATACCTTGTTTAGACTAGTAAGTTTTCATCAACAGCAACAACCACAACA
VVI179D05_611698 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI179D05 5, mRNA sequence.
DV220018.1:47-70
AAGGGTTATTTTGATGTGGGTCTGTGGTTA47AATGGATACCTTGTTTAGACTAGTCAGTCTTCAATCCGATCAATCCTACAACTC
Vitis vinifera 5-prime EST SS0ABG61YO18FM1.
FQ437449.1:235-258
AAGGGTTATTTTGATGTGGGTCTGTGGTTA235AATGGATACCTTGTTTAGACTAGTCAGTCTTCAATCCGATCAATCCTACAACTC
Vitis vinifera 5-prime EST SS0AEB2YM04FM1.
FQ475940.1:53-76
AAGGGTTATTTTGATGTGGGTCTGTGGTTA53AATGGATACCTTGTTTAGACTAGTCAGTCTTCAATCCGATCAATCCTACAACTC
GM_WBc0096N01.r GM_WBc Glycine max genomic clone GM_WBc0096N01 3', genomic survey sequence.
EI349298.1:599-622
CACTCACATTGTTTATTTTGATGTGGGTTA599AATGGATACCTTGTTTAGACTAGTAAGTTTTCATTCACAGCAACAACCA
Muscadinia rotundifolia cv. Regale BAC end sequence.
FO858809.1:122-145
CAGGGTTATTTTGATGTGGGTCTGTGGTTA122AATGGATACCTTGTTTAGACTAGTCAGCCTTCAATCCGATCAATCCTACAACTC
Glycine max cultivar Williams 82 chromosome 5.
CP126430.1:30289796-30289819
CACTCACATTTGTTTATTTGATGTAGGTTA30289796AATGGATACCTTGTTTAGACTAGTAAGTTTTCATCAACAACAACAACCCGATCC
Fagus sylvatica genome assembly, chromosome: 8.
OU015768.1:8315159-8315182
TGATGTGGGTCTCTTTGCCCTGTGGGCTTA8315159AATGGATACCTTGTTTAGACTAGTCAGTCTTCAATCTTCTGATCAATCTTTCAA
Spergularia bocconei genome assembly, chromosome: 2.
OY734943.1:4417588-4417611
TAAGGTGATAAGTTTACATGGTTGGGGTTA4417588AATGGATACCTTGTTTAGACTAGTGAGTTTCCAACAACCACACTCAAAACAACA
Spergularia bocconei genome assembly, chromosome: 4.
OY734945.1:4488797-4488820
TAAGGTCATAAGTTTACATGGTTGGGGTTA4488797AATGGATACCTTGTTTAGACTAGTGAGTTTCCAACAACCACACTCATCAAAACA
Spergularia marina genome assembly, chromosome: 2.
OY804545.1:22478244-22478267
TAAGGTGATAAGTTTACATGGTTGGGGTTA22478244AATGGATACCTTGTTTAGACTAGTGAGTTTCCAACAACCACACTCAAAACAACA
Viola odorata genome assembly, chromosome: 6.
OY829542.1:2457872-2457895
GGTATCTTTCTTTTAAAAAAGTTTTGGTTA2457872AATGGATACCTTGTTTAGACTAGTAACTCTCCAACACCAACAACAACTCCATCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTAGTCTAAACAAGGTATCCATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTAGTCTAAACAAGGTATCCATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.358 | 0.350 | search_plus_done; http://172.18.8.135:50400/match?q=ACTAGTCTAAACAAGGTATCCATT&k=0&no_gap=0&offset=0&limit=50
1.021 | 0.663 | search_minus_done; http://172.18.8.135:50400/match?q=AATGGATACCTTGTTTAGACTAGT&k=0&no_gap=0&offset=0&limit=39
1.035 | 0.013 | cgi_end;

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