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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:23:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR1A530JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV529721.1:667-688
TTGCTTAACCTCCCAAGAAACATACAGTAC667ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RR2BH12JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543188.1:655-676
TTGCTTAACCTCCCAAGAAACATACAGTAG655ACTCCGTCTATCCCACAGAACAACCTCTGACGAAGAGAATTGTTGGGACGGG
RS1AT39JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721736.1:667-688
TTGCTTAACCTCCCAAGAAACATACAGTAG667ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RR2C909JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX760031.1:648-669
TTGCTTAACCTCCCAAGAAACATACAGTAG648ACTCCGTCTATCCCACAGAACAACCTCTGACGAAGAGAATTGTTGGGACGGG
RR4BY05JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX775103.1:697-718
TTGCTTAACCTCCCAAGAAACATACAGTAG697ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGGGGG
RR4CL72JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX776802.1:683-704
TTGCTTAACCTCCCAAGAAACATACAGTAG683ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RS2C237JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900082.1:689-710
TTGCTTAACCTCCCAAGAAACATACAGTAG689ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RR1DP19JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY894847.1:670-691
TTGCTTAACCTCCCAAGAAACATACAGTAG670ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RR4EF11JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY921007.1:686-707
TTGCTTAACCTCCCAAGAAACATACAGTAG686ACTCCGTCTATCCCACAGAACAACCTCTGGCGAA
RR2F236JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD538068.1:687-708
TTGCTTAACCTCCCAAGAAACATACAGTAG687ACTCCGTCTATCCCACAGAACAACCTCTGACGAAGAGAATTGTTGGG
RS1FP06JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD568004.1:686-707
TTGCTTAACCTCCCAAGAAACATACAGTAG686ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RS1FR74JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD568189.1:687-708
TTGCTTAACCTCCCAAGAAACATACAGTAC687ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RS2FR22JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575319.1:671-692
TTGCTTAACCTCCCAAGAAACATACAGTAC671ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGG
RS1G144JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934736.1:686-707
TTGCTTAACCTCCCAAGAAACATACAGTAC686ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTG
RS1GK43JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD935982.1:323-344
GTGCTTAACCTCCCAAGAAACATACAGTAC323ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGG
RR2GX59JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD968852.1:684-705
TTGCTTAACCTCCCAAGAAACATACAGTAG684ACTCCGTCTATCCCACAGAACAACCTCTGACGAAGAGAATTGTTGG
RR3GX70JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976980.1:661-682
TTGCTTAACCTCCCAAGAAACATACAGTAG661ACTCCGTCTATCCCACAGAACAACCTCTGGTGAAGAGAATTGTTGGGGCG
Raphanus sativus mRNA, clone: RSCF14N18, 5' end sequence.
FY431582.1:669-690
TTGCTTAACCTCCCAAGAAACATACAGTAG669ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTGGGGCGGG
Raphanus sativus mRNA, clone: RSCF14O07, 5' end sequence.
FY431592.1:671-692
TTGCTTAACCTCCCAAGAAACATACAGTAG671ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTGGGGCGGG
Raphanus sativus mRNA, clone: RSCR04A08, 5' end sequence.
FY440851.1:668-689
TTGCTTAACCTCCCAAGAAACATACAGTAG668ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTGGGGCGGG
0243621 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO917880.1:642-663
TTGCTCAATGTACCAAGAACCATACAGTAG642ACTCCGTCTATCCCACAGAACATCCTCTGGCGAATAGAGTTGTGGGGGCGGG
0280374 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO939630.1:643-664
TTGCTCAATGTACCAAGAAACATACAGTAG643ACTCCGTCTATCCCACAGAACAACCTCTGGCGAACAGAGTTGTTGGTGCGTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_29671.
FX674779.1:523-544
TTGCTTAACCTCCCAAGAAACATACAGTAG523ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTGGGGCGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1966.
FX749512.1:648-669
TTGCTCAATGTACCAAGAAACATACAGTAG648ACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAGTTATTAGGCCGGG
KBrH045H23R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH045H23, genomic survey sequence.
DX909360.1:99-120
TTGCTCAATGTACCAAGAAACATACAGTAG99ACTCCGTCTATCCCACAGAACAACCTGAAACACAGTGTCAGAACCAACATGT
Brassica rapa subsp. pekinensis clone KBrB069M24, complete sequence.
CU984554.1:142594-142615
TTGCTCAATGTACCAAGAAACATACAGTAG142594ACTCCGTCTATCCCACAGAACAACCTGAAACACAGTGTCAGAACCAACATGT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:40012962-40012983
TTGCTCAATGTACCAAGAAACATACAGTAG40012962ACTCCGTCTATCCCACAGAACAACCTGAAACACAGATTGTCAGAACCAACAT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:45243474-45243495
TTGCTCAAAGTACCAAGAAACATACAGCAG45243474ACTCCGTCTATCCCACAGAACAACCTGAAACACAGATTGTAAGAATCAACAT
Brassica rapa genome, scaffold: A01.
LR031571.1:31842099-31842120
TTGCTCAATGTACCAAGAAACATACAGTAG31842099ACTCCGTCTATCCCACAGAACAACCTGAAACACAGATTGTCAGAACCAACAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:44269063-44269084
TTGCTCAAAGTACCAAGAAACATACAGTAG44269063ACTCCGTCTATCCCACAGAACAACCTGAAACATTGTAAGAATCAACATGTAT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:32374436-32374457
TTGCTCAATGTACCAAGAAACATACAGTAG32374436ACTCCGTCTATCCCACAGAACAACCTGAAACACAGATTGTCAGAACCAACAT
RFO2.115I18F010530 RFO2 Brassica napus cDNA clone RFO2115I18, mRNA sequence.
CD839494.1:240-261
CCCGCCCCAACAACTCTCTTCGCCAGAGGT240TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
RFO2.120I10F010606 RFO2 Brassica napus cDNA clone RFO2120I10, mRNA sequence.
CD840746.1:269-290
CCCGCCCCAACAACTCTCTTCGCCAGAGGT269TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
RFO2.121L01F010608 RFO2 Brassica napus cDNA clone RFO2121L01, mRNA sequence.
CD841062.1:241-262
CCCGCCCCAACAACTCTCTTCGCCAGAGGT241TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
RFO2.122G02F010618 RFO2 Brassica napus cDNA clone RFO2122G02, mRNA sequence.
CD841251.1:261-282
CCGCGCCCAACAACTCTCTTCGCCAGAGGT261TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BMSA01-T7-17-D12 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG021018.1:246-267
CCCGCCCCAATAACTCTCTTCGCCAGAGGT246TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BMSA01-T7-18-B04 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG021059.1:245-266
CCCGCCCCAATAACTCTCTTCGCCAGAGGT245TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BNARO6GH_T3_030_F10_08DEC2006_070 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES913071.1:208-229
CCCGCCCCAATAACTCTCTTCGCCAGAGGT208TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
RR1A530TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV524818.1:278-299
CCCGCCCTAACAATTCTCTTCGCCAGAGGT278TGTTCTGTGGGATAGACGGAGTGTACTGTATGTTTCTTGGGAGGTTAAGCAA
RR2A859TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV535550.1:265-286
CCCGTCCCAACAATTCTCTTCGTCAGAGGT265TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
RR2BH12TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539392.1:259-280
CCCGTCCCAACAATTCTCTTCGTCAGAGGT259TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
RR3AS48TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550128.1:253-274
CCCGCCCCAACAATTCTCTTCACCAGAGGT253TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
RR4BA37TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV569622.1:275-296
CCCGCCCTAACAATTCTCTTCGCCAGAGGT275TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
RS1AT39TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW718110.1:281-302
CCCGCCCTAACAATTCTCTTCGCCAGAGGT281TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
BR081074 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-005C10 5', mRNA sequence.
EX094784.1:243-264
CCCGGCCTAATAACTCTCTTCGCCAGAGGT243TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BR081375 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-010G03 5', mRNA sequence.
EX095085.1:243-264
CCCGGCCTAATAACTCTCTTCGCCAGAGGT243TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BR081942 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-020B05 5', mRNA sequence.
EX095652.1:243-264
CCCGGCCTAATAACTCTCTTCGCCAGAGGT243TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BR082095 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-022B07 5', mRNA sequence.
EX095805.1:243-264
CCCGGCCTAATAACTCTCTTCGCCAGAGGT243TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BR083103 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-035F04 5', mRNA sequence.
EX096813.1:243-264
CCCGGCCTAATAACTCTCTTCGCCAGAGGT243TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
BR083213 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-037G10 5', mRNA sequence.
EX096923.1:246-267
CCCGGCCTAATAACTCTCTTCGCCAGAGGT246TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1417.
FX711035.1:204-225
ACATGTTGGTTCTGACACTGTGTTTCAGGT204TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2705.
FX751352.1:280-301
CCCGCCCTAACAATTCTCTTCGCCAGAGGT280TGTTCTGTGGGATAGACGGAGTGTACTGTATGTTTCTTGGGAGGTTAAGCAA
Brassica rapa subsp. pekinensis clone KBrH045H23, complete sequence.
FP340641.1:100389-100410
ACATGTTGGTTCTGACACTGTGTTTCAGGT100389TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8155877-8155898
ATGTTGATTCTTACAATCTGTGTTTCAGGT8155877TGTTCTGTGGGATAGACGGAGTCTGCTGTATGTTTCTTGGTACTTTGAGCAA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:26929200-26929221
ATGTTGGTTCTGACAATCTGTGTTTCAGGT26929200TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGTACATTGAGCAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3965319-3965340
AAACACATTCTTACAATCTGTGTTTCAGGT3965319TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3965319-3965340
AAACACATTCTTACAATCTGTGTTTCAGGT3965319TGTTCTGTGGGATAGACGGAGTCTACTGTATGTTTCTTGGGAGGTTAAGCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTCCGTCTATCCCACAGAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTCCGTCTATCCCACAGAACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.863 | 1.855 | search_plus_done; http://172.18.8.135:50400/match?q=ACTCCGTCTATCCCACAGAACA&k=0&no_gap=0&offset=0&limit=50
3.024 | 1.161 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTCTGTGGGATAGACGGAGT&k=0&no_gap=0&offset=0&limit=19
3.041 | 0.017 | cgi_end;

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