GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:32:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Allium fistulosum mRNA, contig: AFU_03953.
FX557678.1:38-57
ACGCATATCCCTGCTGCATGATTTTAGGAA38ACTCCTGACACAACCCCTTGCGACCATTGTCAGCGAGCATTTTGTCTAGG
TSA: Allium cepa CUDHLF2_16429 mRNA sequence.
JR859247.1:385-404
ACGCATATCCCTGCTGCATGATTTTAGGAA385ACTCCTGACACAACCCCTTGCGGCCATTGTCATCAAGCATTTGTCTAGAG
Allium cepa genome assembly, chromosome: 8.
LR994636.1:1026312-1026331
TCGCAAAAACCTGCTGCATGATTTTAGGAA1026312ACTCCTGACACAACCCCTTGCGGCCATTGTCATCAAGCATTTTGTCTAGA
Lysandra bellargus genome assembly, chromosome: 7.
HG995326.1:10723867-10723886
TTTTTGTACAACAATATGGTTGCGCCACTG10723867ACTCCTGACACAACCCCTTGGGGAAACCACTAGTTAAAGGTGACATTTTT
Membranipora membranacea genome assembly, chromosome: 4.
OU612068.1:24513404-24513423
AATGTTCAGCGCCCTCTATAATAAGGGATA24513404ACTCCTGACACAACCCCTTGAGTTAGAATAATTCCACTATATAAATCAAG
Lysandra coridon genome assembly, chromosome: 7.
HG992062.1:4084211-4084230
AAAAATGTCACCTTTAACCGGTGGTTTCCC4084211CAAGGGGTTGTGTCAGGAGTCAGTGGCGCAACCATATTGTTGTACAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTCCTGACACAACCCCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTCCTGACACAACCCCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.150 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=ACTCCTGACACAACCCCTTG&k=0&no_gap=0&offset=0&limit=50
0.182 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGGGTTGTGTCAGGAGT&k=0&no_gap=0&offset=0&limit=45
0.183 | 0.001 | cgi_end;

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