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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 20:59:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Raphanus sativus var. sativus RNA, contig: WG3_13119.
FX668761.1:350-369
CGAACTTCGTTGGATGGATGCTTCCTAAGA350ACTCGATTCACATGCCTTCCAATATCAGTTTCCTGAAGAGCTTGGAATGT
TSA: Raphanus sativus RS16732 mRNA sequence.
JT801279.1:694-713
CGAACTTCGTTGGATGGATGCTTCCTAAGA694ACTCGATTCACATGCCTTCCAATATCAGTTTCCTGAAGAGCTTGGAATGT
Draba incana genome assembly, chromosome: 4.
OY755205.1:6643428-6643447
CTTCGAACATTGTTCGATGGATGCTTCCGA6643428ACTCGATTCACATGCCTTCCAATATCAGTTTCCTAAAGTTACCAAAAACC
Draba incana genome assembly, chromosome: 5.
OY755206.1:15884820-15884839
CTTCGAACATTGTTCGATGGATGCTTCCGA15884820ACTCGATTCACATGCCTTCCAATATCAGTTTCCTAAAGTTACCAAAAAAC
Raphanus sativus mRNA, clone: RSCS02N11, 5' end sequence.
FY446833.1:546-565
ACATTCCAAGCTCTTCAGGAAACTGATATT546GGAAGGCATGTGAATCGAGTTCTTAGGAAGCATCCATCCAACGAAGTTCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20609.
FX794047.1:379-398
ACATTCCAAGCTCTTCAGGAAACTGATATT379GGAAGGCATGTGAATCGAGTTCTTAGGAAGCATCCATCCAACGAAGTTCG
Draba incana genome assembly, chromosome: 2.
OY755203.1:46567817-46567836
TGTTTTTGGTAACTTTAGGAAACTGATATT46567817GGAAGGCATGTGAATCGAGTTCGGAAGCATCCATCGAACAATGTTCGAAG
Draba incana genome assembly, chromosome: 12.
OY755213.1:18391065-18391084
GTTTCTCATGATGAGGTTAAAGCTGATATT18391065GGAAGGCATGTGAATCGAGTTCGGAAGCATCCATCGAACAATGTTCGAAG
Draba incana genome assembly, chromosome: 14.
OY755215.1:13762525-13762544
GGTTTTTGGTAACTTCAGGAAACAGATATT13762525GGAAGGCATGTGAATCGAGTTCAGAAGCATCCATCGAACAATGTTCGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTCGATTCACATGCCTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTCGATTCACATGCCTTCC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.163 | 0.155 | search_plus_done; http://172.18.8.135:50400/match?q=ACTCGATTCACATGCCTTCC&k=0&no_gap=0&offset=0&limit=50
0.367 | 0.204 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGGCATGTGAATCGAGT&k=0&no_gap=0&offset=0&limit=46
0.371 | 0.003 | cgi_end;

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