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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 09:52:09, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_9237, mRNA sequence.
JW927402.1:1591-1610
GAGGAGGATGAGAGTGGTAGAATTGCAAGA1591ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Citrullus amarus cultivar PI 296341-FR chromosome 6.
CP155268.1:2814863-2814882
GTGGAGGATGAGAGTGGTAGAATTGCAAGA2814863ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Citrullus amarus cultivar PI 189225 chromosome 6.
CP155279.1:2307302-2307321
GTGGAGGATGAGAGTGGTAGAATTGCAAGA2307302ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Citrullus amarus cultivar RCAT 055816 chromosome 6.
CP155290.1:3261703-3261722
GTGGAGGATGAGAGTGGTAGAATTGCAAGA3261703ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Citrullus amarus cultivar PI 271769 chromosome 6.
CP155301.1:2392654-2392673
GTGGAGGATGAGAGTGGTAGAATTGCAAGA2392654ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Citrullus amarus cultivar PI 482276 chromosome 6.
CP155323.1:3051238-3051257
GTGGAGGATGAGAGTGGTAGAATTGCAAGA3051238ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Cucumis melo genomic scaffold, anchoredscaffold00052.
LN681925.1:1608558-1608577
GAGGAGGATGAGAGTGGTAGAATTGCAAGA1608558ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Cucumis melo genomic chromosome, chr_11.
LN713265.1:30577869-30577888
GAGGAGGATGAGAGTGGTAGAATTGCAAGA30577869ACTCTTGAAGCTGACCGATGAGCTGCCTAAGCATGGCCAGGCCTTCCATG
Herminia tarsipennalis genome assembly, chromosome: 11.
OX243841.2:11839539-11839558
TGTTAAACAGTTTTTCTCGAAAAAAAAAAC11839539ACTCTTGAAGCTGACCGATGCGAGAAACGAACTACTAATGTTCCCTGACG
Melitaea interrupta genome assembly, chromosome: 8.
OZ196766.1:244554-244573
GGATAACAAAGTTCCACCTACCACCTTGGA244554ACTCTTGAAGCTGACCGATGGCGGGATAATCATCCTACAGCTGACTTTTT
Cucumis melo subsp. melo EST, clone PSI_06-F06-M13R.
AM720643.2:91-110
CATGGAAGGCCTGGCCATGCTTAGGCAGCT91CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
Cucumis melo subsp. agrestis EST, clone A_11-E03-M13R.
AM727461.2:66-85
CATGGAAGGCCTGGCCATGCTTAGGCAGCT66CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
csa01-3ms1-g10 Csa01 Cucumis sativus cDNA clone csa01-3ms1-g10 5', mRNA sequence.
CO998677.1:97-116
CATGGAAGGCCTGGCCATGCTTAGGCAGCT97CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
EST1102340 Dulce mature fruit library Cucumis melo cDNA clone FR14L2, mRNA sequence.
DV633744.1:39-58
CATGGAAGGCCTGGCCATGCTTAGGCAGCT39CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
EST11006611 CM-PEa library Cucumis melo cDNA clone PEa0013F11, mRNA sequence.
JG464898.1:41-60
CATGGAAGGCCTGGCCATGCTTAGGCAGCT41CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:876521-876540
CATGGAAGGCCTGGCCATGCTTAGGCAGCT876521CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCTC
Citrullus lanatus cultivar Allsugar chromosome 6.
CP155014.1:1268677-1268696
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1268677CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar Charleston Gray chromosome 6.
CP155147.1:1273516-1273535
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1273516CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar Calhoun Gray chromosome 6.
CP155158.1:1284594-1284613
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1284594CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar PKR6 chromosome 6.
CP155169.1:1275011-1275030
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1275011CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar Sugarlee chromosome 6.
CP155180.1:1262694-1262713
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1262694CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar ShiHongNo2 chromosome 6.
CP155191.1:1256081-1256100
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1256081CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar PI 288522 chromosome 6.
CP155202.1:1038737-1038756
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1038737CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar DaBanHongZiGua chromosome 6.
CP155213.1:1280744-1280763
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1280744CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar PI 381740 chromosome 6.
CP155224.1:1302585-1302604
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1302585CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar SanBaiGua chromosome 6.
CP155235.1:1096066-1096085
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1096066CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar PI 254622 chromosome 6.
CP155246.1:1299043-1299062
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1299043CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus cultivar HeiShanRen chromosome 6.
CP155257.1:1268677-1268696
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1268677CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 6.
CP155312.1:1084826-1084845
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1084826CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 6.
CP155334.1:1096541-1096560
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1096541CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus colocynthis cultivar PI 537300 chromosome 6.
CP155345.1:1137088-1137107
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1137088CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus colocynthis cultivar PI 525081 chromosome 6.
CP155356.1:1095004-1095023
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1095004CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus naudinianus cultivar PI 596694M chromosome 6.
CP155367.1:2168138-2168157
CATGGAAGGCCTGGCCATGCTTAGGCAGCT2168138CATCGGTCAGCTTCAAGAGTTCTTGCAATTTTACCACTCTCATCCTCCGC
Citrullus colocynthis cultivar PI 652554 chromosome 6.
CP155378.1:1057084-1057103
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1057084CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus colocynthis cultivar PI 632755 chromosome 6.
CP155389.1:1103551-1103570
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1103551CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus rehmii cultivar PI 670011 chromosome 6.
CP155400.1:2180279-2180298
CATGGAAAGCCTGGCCATGCTTAGGCAGCT2180279CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus ecirrhosus cultivar PI 673135 chromosome 6.
CP155411.1:1144920-1144939
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1144920CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC
Citrullus colocynthis genome assembly, chromosome: 9.
OZ021743.1:1044386-1044405
CATGGAAGGCCTGGCCATGCTTAGGCAGCT1044386CATCGGTCAGCTTCAAGAGTTCTTGCAATTCTACCACTCTCATCCTCCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTCTTGAAGCTGACCGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTCTTGAAGCTGACCGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.298 | 0.289 | search_plus_done; http://172.18.8.135:50800/match?q=ACTCTTGAAGCTGACCGATG&k=0&no_gap=0&offset=0&limit=50
0.896 | 0.598 | search_minus_done; http://172.18.8.135:50800/match?q=CATCGGTCAGCTTCAAGAGT&k=0&no_gap=0&offset=0&limit=40
0.916 | 0.019 | cgi_end;

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