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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Physalis peruviana Php00a01298.07808 mRNA sequence.
JO131902.1:1000-1019
ATAGGCTTGCCATCATTGCCCAAGGTGTAA1000ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAAGAGAGCCATCAA
TSA: Physalis peruviana Php00a01298.07809 mRNA sequence.
JO131903.1:1000-1019
ATAGGCTTGCCATCATTGCCCAAGGTGTAA1000ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAAGAGAGCCATCAA
TSA: Capsicum annuum CM334_CLC_21911, mRNA sequence.
JW113687.1:1129-1148
ATAGGCTTGCCATCATTGCCCAAGGTGTAA1129ACTGGCCAAGCTTTTGCTACTGATCCATCGTTATTCAGAAGAGCCATCAA
TSA: Nicotiana benthamiana isotig06145.Nb_flower mRNA sequence.
KA734932.1:425-444
TTAGGCTTCCCATCATTGCCCAATGTGTAA425ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAAGAGCCATCAA
TSA: Nicotiana benthamiana isotig05643.Nb_root mRNA sequence.
KA752348.1:891-910
TTAGGCTTCCCATCATTGCCCAATGTGTAA891ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAAGAGCCATCAA
TSA: Nicotiana benthamiana isotig02239.Nb_seed_cap mRNA sequence.
KA760709.1:996-1015
TTAGGCTTACCATCATTGCCCAATGTGTAA996ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAAGAGCCATCAA
CHO_OF4520xe11r1.ab1 CHO_OF4 Nicotiana tabacum genomic 3', genomic survey sequence.
FH371000.1:723-742
TTACGCTTCCCATCATTGCCCAATGTGTAA723ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAGAGCCATCAAG
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:274348880-274348899
ATAGGCTTGCCATCATTGCCCAAGGTGTAA274348880ACTGGCCAAGCTTTTGCTACTGATCCATCGTTATTCAGAAGAGCCATCAA
Solanum lycopersicum Micro-Tom DNA, chromosome 11, draft genome sequence.
AP028945.1:59821935-59821954
ATAGGCTTTCCATCATTGCCCAAGGTGTAA59821935ACTGGCCAAGCTTTTGCTACTGATCCATCATTGTTCAGAAGAGCCATCAA
Solanum lycopersicum cultivar I-3 chromosome 11.
CP023767.1:54414222-54414241
ATAGGCTTTCCATCATTGCCCAAGGTGTAA54414222ACTGGCCAAGCTTTTGCTACTGATCCATCATTGTTCAGAAGAGCCATCAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:111981582-111981601
ATAGGCTTGCCATCATCGCCCAAGGTGTAA111981582ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAAGAGCCATCAA
Solanum lycopersicum chromosome ch11, complete genome.
HG975523.1:51494942-51494961
ATAGGCTTTCCATCATTGCCCAAGGTGTAA51494942ACTGGCCAAGCTTTTGCTACTGATCCATCATTGTTCAGAAGAGCCATCAA
Solanum lycopersicum genome assembly, chromosome: 11.
OU640354.1:55329169-55329188
ATAGGCTTTCCATCATTGCCCAAGGTGTAA55329169ACTGGCCAAGCTTTTGCTACTGATCCATCATTGTTCAGAAGAGCCATCAA
Solanum dulcamara genome assembly, chromosome: 9.
OX359260.1:73886000-73886019
ATAGGCTTGCCATCATTGCCCAAGGTGTAA73886000ACTGGCCAAGCTTTTGCTACTGATCCATCATTATTCAGAAGAGCCATCAA
Philonthus spinipes genome assembly, chromosome: 8.
OY720307.1:19557901-19557920
CAAACCAGTGGTCTCCTTTATCTCTACACT19557901ACTGGCCAAGCTTTTGCTACATTAACTACCATACACAAATAACATATGCA
EST423660 potato leaves and petioles Solanum tuberosum cDNA clone cSTB3C17 5' sequence, mRNA sequence.
BE919891.1:111-130
TTGATGGCTCTTCTGAACAATGATGGATCA111GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
EST468593 tomato crown gall Solanum lycopersicum cDNA clone cTOE23I20 5' sequence, mRNA sequence.
BG135701.1:46-65
TTGATGGCTCTTCTGAACAATGATGGATCA46GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGAAAGCCTAT
EST497393 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI2K17 5' sequence, mRNA sequence.
BG589551.1:496-515
TTGATGGCTCTTCTGAACAATGATGGATCA496GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
KS01039H03 KS01 Capsicum annuum cDNA, mRNA sequence.
BM062210.1:66-85
TTGATGGCTCTTCTGAATAACGATGGATCA66GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
SV6_29C10_SV6_29_070 SV6 Solanum chacoense cDNA, mRNA sequence.
DN980760.1:716-735
CTTGATGGCTCTTCTGAAAATGATGGATCA716GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCATGATGGCAAGCCTTTT
KL4B.101L08F.051103T7 KL4B Nicotiana tabacum cDNA clone KL4B.101L08, mRNA sequence.
DV999325.1:216-235
TTGATGGCTCTTCTGAATAATGATGGATCA216GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCGGTGATGGGAAGCCTAA
KG9B.101B07F.060120T7 KG9B Nicotiana tabacum cDNA clone KG9B.101B07, mRNA sequence.
EB677194.1:149-168
TTGATGGCTCTTCTGAATAATGATGGATCA149GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCGGTGATGGGAAGCCTAA
AGN_ELP008xf24f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG136408.1:416-435
TTGATGGCTCTTCTGAATAATGATGGATCA416GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCGGTGATGGGAAGCCTAA
AGN_ELP004xl16f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG137662.1:406-425
TTGATGGCTCTTCTGAATAATGATGGATCA406GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCGGTGATGGGAAGCCTAA
AGN_ELP024xf11f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG139523.1:584-603
TTGATGGCTCTTCTGAATAATGATGGATCA584GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCGGTGATGGGAAGCCTAA
AGN_PNL222af1_a11.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG194537.1:129-148
TTGATGGCTCTTCTGAATAATGATGGATCA129GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCAATGATGGGAAGCCTAA
KS20028E03 KS20 Capsicum annuum cDNA, mRNA sequence.
GD095910.1:174-193
TTGATGGCTCTTCTGAATAACGATGGATCA174GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
TSA: Capsicum annuum MGMT_Contig11926, mRNA sequence.
JW062170.1:1567-1586
TTGATGGCTCTTCTGAATAACGATGGATCA1567GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
CHO_OF4520xe11f1.ab1 CHO_OF4 Nicotiana tabacum genomic 5', genomic survey sequence.
FH370917.1:508-527
TTGATGGCTCTTCTGAATAATGATGGATCA508GTAGCAAAAGCTTGGCCAGTTTACACATTGGGCAATGATGGGAAGCCTAA
LuSp133F04_1061063901396_TP POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp133F04, genomic survey sequence.
GS347276.1:393-412
TTGATGGCTCTTCTGAACAATGATGGATCA393GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum tuberosum cultivar P8 chromosome 11.
CP046684.1:41859352-41859371
TTGATGGCTCTTCTGAACAATGATGGATCA41859352GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum tuberosum cultivar MSH/14-112 chromosome 11.
CP046691.1:41859503-41859522
TTGATGGCTCTTCTGAACAATGATGGATCA41859503GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum pinnatisectum cultivar CGN17745 chromosome 11.
CP047563.1:41832369-41832388
TTGATGGCTCTTCTGAACAATGATGGATCA41832369GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum tuberosum cultivar Solyntus chromosome 11.
CP055244.1:52611018-52611037
TTGATGGCTCTTCTGAACAATGATGGATCA52611018GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:3039881-3039900
TTGATGGCTCTTCTGAATAACGATGGATCA3039881GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum verrucosum cultivar 11H23 chromosome 11.
CP133622.1:42266969-42266988
TTGATGGCTCTTCTGAACAATGATGGATCA42266969GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGCAAGCCTAT
Solanum pennellii chromosome ch11, complete genome.
HG975450.1:64244345-64244364
TTGATGGCTCTTCTGAACAATGATGGATCA64244345GTAGCAAAAGCTTGGCCAGTTTACACCTTGGGCAATGATGGAAAGCCTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTGGCCAAGCTTTTGCTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTGGCCAAGCTTTTGCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.350 | 0.342 | search_plus_done; http://172.18.8.135:50400/match?q=ACTGGCCAAGCTTTTGCTAC&k=0&no_gap=0&offset=0&limit=50
1.214 | 0.864 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCAAAAGCTTGGCCAGT&k=0&no_gap=0&offset=0&limit=35
1.229 | 0.015 | cgi_end;

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