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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:41:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Labrus bergylta genome assembly, chromosome: 8.
OZ005716.1:6701379-6701398
CAAGGCCCCGACAGCTTGCTTTCCTCTGGC6701379ACTGGCCGAGATCAAAGATGCCTGCTAGAAATCAGATTAGAGTAAAGAAG
Porphyra yezoensis cDNA clone:PM029d11_r, 5' end.
AV433465.1:289-308
GGTTGATAAACTCAAAGTAGGGGGGGCAGC289ACTGGCCGAGATCAAAGATGATATCCTTCGCCCCCGCCATCAGCTCGGCC
Porphyra yezoensis cDNA clone:PM040g11_r, 5' end.
AV434274.1:289-308
GGTTGATAAACTCAAAGTAGGGGGGGCAGC289ACTGGCCGAGATCAAAGATGATATCCTTCGCCCCCGCCATCAGCTCGGCC
Porphyra yezoensis cDNA clone:PM046b02_r, 5' end.
AV434646.1:287-306
GGTTGATAAACTCAAAGTAGGGGGGGCAGC287ACTGGCCGAGATCAAAGATGATATCCTTCGCCCCCGCCATCAGCTCGGCC
Oryza sativa Indica Group genomic DNA, BAC end sequence, BAC clone:K0017E07_F.
AG833985.1:271-290
GCAAAATCCAAGGCACTACGAGTTATTTCT271ACTGGCCGAGATCAAAGATGATGTACTCATGCTGGAAGCGAGAAGCTCGC
Oryza sativa chromosome 10 clone OSJNBb0019J01, *** SEQUENCING IN PROGRESS ***, 62 unordered pieces.
AC078890.1:82314-82333
GCAAAATCCAAGGCACTACGAGTTATTTCT82314ACTGGCCGAGATCAAAGATGATGTACTCATGCTGGAAGCGAGAAGCTCGC
Oryza sativa Japonica Group cultivar Kitaake clone OSJKBb0100-E15, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC276365.1:48902-48921
GCAAAATCCAAGGCACTACGAGTTATTTCT48902ACTGGCCGAGATCAAAGATGATGTACTCATGCTGGAAGCGAGAAGCTCGC
Oryza sativa cultivar Minghui63 NBS-LRR-like resistance protein (Os10g04060) gene, complete cds.
KP401716.1:6272-6291
GCAAAATCCAAGGCACTACGAGTTATTTCT6272ACTGGCCGAGATCAAAGATGATGTACTCATGCTGGAAGCGAGAAGCTCGC
Oryza sativa cultivar Tetep NBS-LRR-like resistance protein (Os10g04060) gene, complete cds.
KP401718.1:6275-6294
GCAAAATCCAAGGCACTACGAGTTATTTCT6275ACTGGCCGAGATCAAAGATGATGTACTCATGCTGGAAGCGAGAAGCTCGC
Bufo bufo genome assembly, chromosome: 5.
LR991671.1:100716452-100716471
TCTTGTTACTTCTTTTCCCCTCTAAAAAGT100716452CATCTTTGATCTCGGCCAGTAATTATTTCTCTACCAGGCATCCTGAGAGA
Labrus mixtus genome assembly, chromosome: 11.
OY757294.1:24009407-24009426
CTTCTTTACTCTAATCTGATTTCTAGCAGG24009407CATCTTTGATCTCGGCCAGTGCCAGAGGAAAGCAAGCTGTCGGGGCCTTG
Sequence 61744 from patent US 7365185.
EA682865.1:47349-47368
GCGAGCTTCTCGCTTCCAGCATGAGTACAT47349CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Sequence 61744 from patent US 7790958.
GX547719.1:47349-47368
GCGAGCTTCTCGCTTCCAGCATGAGTACAT47349CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Sequence 13002 from patent US 7868149.
GX917094.1:19510-19529
GCGAGCTTCTCGCTTCCAGCATGAGTACAT19510CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group chromosome 10 clone OSJNBb0072F04, complete sequence.
AC092553.4:101174-101193
GCGAGCTTCTCGCTTCCAGCATGAGTACAT101174CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group chromosome 10 clone OSJNAb0072F04, complete sequence.
AC122147.1:68053-68072
GCGAGCTTCTCGCTTCCAGCATGAGTACAT68053CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
AC145127.1:1849600-1849619
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1849600CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
AP014966.1:1870591-1870610
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1870591CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 10.
AP027394.1:1871379-1871398
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1871379CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Indica Group cultivar Shuhui498 chromosome 10, partial sequence.
CP018166.1:2420823-2420842
GCGAGCTTCTCGCTTCCAGCATGAGTACAT2420823CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Indica Group cultivar Minghui 63 chromosome 10.
CP054685.1:2344362-2344381
GCGAGCTTCTCGCTTCCAGCATGAGTACAT2344362CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 10.
CP056061.1:2360459-2360478
GTGAGCTTCTCGCTTCCAGCATGAGTACAT2360459CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 1.
CP101141.1:1839004-1839023
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1839004CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 10.
CP132244.1:1877901-1877920
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1877901CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa indica subgroup cultivar ZH8015 chromosome 10.
CP141106.1:2318908-2318927
GCGAGCTTCTCGCTTCCAGCATGAGTACAT2318908CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Warburgia ugandensis isolate CL-2023a chromosome 1.
CP141126.1:15481041-15481060
CAAAGCTCATGTTACAGCCACACAATCTCT15481041CATCTTTGATCTCGGCCAGTGGTACTTCGGTTTGGACGTTGACATCAACA
Oryza sativa cultivar Q2436 NBS-LRR-like resistance protein (Os10g04060) gene, complete cds.
KP401717.1:1888-1907
GCGAGCTTCTCGCTTCCAGCATGAGTACAT1888CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Oryza sativa genome assembly, chromosome: 10.
OX637255.1:2141337-2141356
GCGAGCTTCTCGCTTCCAGCATGAGTACAT2141337CATCTTTGATCTCGGCCAGTAGAAATAACTCGTAGTGCCTTGGATTTTGC
Orthonevra nobilis genome assembly, chromosome: 1.
OY743224.1:21665446-21665465
CCATTAAAAACCATAATTACCCATCCAATT21665446CATCTTTGATCTCGGCCAGTTGTAGATCATGAAAAGGAGGACATTGCCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTGGCCGAGATCAAAGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTGGCCGAGATCAAAGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.206 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=ACTGGCCGAGATCAAAGATG&k=0&no_gap=0&offset=0&limit=50
0.374 | 0.167 | search_minus_done; http://172.18.8.135:50400/match?q=CATCTTTGATCTCGGCCAGT&k=0&no_gap=0&offset=0&limit=41
0.387 | 0.013 | cgi_end;

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