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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 13:16:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bufo bufo genome assembly, chromosome: 1.
LR991667.1:344631600-344631619
ACAAAATGTGGTCACTTTTTGGGGGTTTTC344631600ACTGTGGGGTTACATCAGGGCCTCTTCAAATGCAACATGGTGCCCAAAGA
TSA: Pyrus x bretschneideri Unigene39515_XinShao mRNA sequence.
JR631459.1:50-69
GGGAGAGGTTAAGATAATTTAAACGCAAAA50ACTGTGGGGTTACATCAGGGATGGGTCCTGTAAAATGATTTTGACTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39446255-39446274
GGGAGAGGTTAAGATAATTTAAACGCAAAA39446255ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36187254-36187273
GGGAGAGGTTAAGATAATTTAAACGCAAAA36187254ACTGTGGGGTTACATCAGGGATGGGTCCTGTCAAATGATTTTGACTCAGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39751656-39751675
GGGAGAGGTTAAGATAATTTAAACGCAAAA39751656ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39077982-39078001
GGGAGAGGTTAAGATAATTTAAACGCAAAA39077982ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:38633787-38633806
GGGAGAGGTTAAGATAATTTAAACGCAAAA38633787ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39091526-39091545
GGGAGAGGTTAAGATAATTTAAACGCAAAA39091526ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39900659-39900678
GGGAGAGGTTAAGATAATTTAAACGCAAAA39900659ACTGTGGGGTTACATCAGGGATGGGTCCTGCCAAATGATTTTGACTCAGA
Maratus speciosus genome assembly, chromosome: X1.
OZ010787.1:583388905-583388924
GTTTTCCGGACTTGACTCCATGGACTATTA583388905ACTGTGGGGTTACATCAGGGCGCAGGTCTATGTTAGTGAGCCAGCTTCTC
Bufo bufo genome assembly, chromosome: 3.
LR991669.1:6200364-6200383
TCTTTGGGCACCATGTTGCATTTGAAGAGA6200364CCCTGATGTAACCCCACAGTGAAAACCCCCAAAAAGTGACCACATTTTGT
020730AVBC009135HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC009135, mRNA sequence.
CN946345.1:25-44
TCAAAATCATTTGGCAGGACCCAT25CCCTGATGTAACCCCACAGTTTTTGCGTTTAAATTATCTTAACCTCTCCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7097828-7097847
TCTGAGTCAAAATCATTTGACAGGACCCAT7097828CCCTGATGTAACCCCACAGTTTTTGCGTTTAAATTATCTTAACCTCTCCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:7364033-7364052
TCTGAGTCAAAATCATTTGGCAGGACCCAT7364033CCCTGATGTAACCCCACAGTTTTTGCGTTTAAATTATCTTAACCTCTCCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6783862-6783881
TCTGAGTCAAAATCATTTGACAGGACCCAT6783862CCCTGATGTAACCCCACAGTTTTTGCGCTTAAATTATCTTAACCTCTCCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7261716-7261735
TCTGAGTCAAAATCATTTGACAGGACCCAT7261716CCCTGATGTAACCCCACAGTTTTTGCGCTTAAATTATCTTAACCTCTCCC
Rosa rugosa genome assembly, chromosome: 6.
OY288196.1:10401234-10401253
GACCAAACACATGAAGCCTAACACCTCCAA10401234CCCTGATGTAACCCCACAGTTCCCAAACTCACTACTCTTATCAGTGAACT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7090911-7090930
TCTGAGTCAAAATCATTTGACAGGACCCAT7090911CCCTGATGTAACCCCACAGTTTTTGCGCTTAAATTATCTTAACCTCTCCC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7470918-7470937
TCTGAGTCAAAATCATTTGACAGGACCCAT7470918CCCTGATGTAACCCCACAGTTTTTGCGTTTAAATTATCTTAACCTCTCCC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5763312-5763331
TCTGAGTCAAAATCATTTTACAGGCCCCAT5763312CCCTGATGTAACCCCACAGTTTTTGCGTTTAAATTATCTTAACCTCTCCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTGTGGGGTTACATCAGGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTGTGGGGTTACATCAGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.356 | 0.347 | search_plus_done; http://172.18.8.135:50400/match?q=ACTGTGGGGTTACATCAGGG&k=0&no_gap=0&offset=0&limit=50
0.496 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=CCCTGATGTAACCCCACAGT&k=0&no_gap=0&offset=0&limit=40
0.503 | 0.007 | cgi_end;

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