GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:16:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Labrus bergylta genome assembly, chromosome: 16.
OZ005724.1:4332454-4332473
ATTAAGACTTTCACTTCTTTCAAGGCTAAG4332454ACTTCAACTTCTTCGCCAACATTTCTCCGTTCACTGCCAACGCTGCAAAT
GOUP4983.g1 GOUP marine metagenome genomic, genomic survey sequence.
KG310362.1:113-132
GTGGTTTTGCGGGGATCTCTGATGCCTACG113ACTTCAACTTCTTCGCCAACTTTGACGATGCCGCGTTCGATACGACCCGT
Sphagnum contortum genome assembly, chromosome: 19.
OY987294.1:5426371-5426390
AAAATACCTTTTCAGCGATTGGTGTGTACA5426371ACTTCAACTTCTTCGCCAACAATGCAGAAATTGGAAAAACTGGCAGTGTT
Anoxybacter fermentans strain DY22613 chromosome, complete genome.
CP016379.1:1840385-1840404
GCACGGTAATCTTCCGGGAAGGTAACATTT1840385ACTTCAACTTCTTCGCCAACTTTGGCGCCAATCAACTGTTCTTCAAAACC
Isoperla grammatica genome assembly, chromosome: 5.
OX246741.1:54868733-54868752
GTTGGCTGCGCCTGGTCTGGAACAACAAGA54868733ACTTCAACTTCTTCGCCAACGATTCCATCTATTTCAACTTTAACAATCGA
Ligdia adustata genome assembly, chromosome: 19.
OX346232.1:8180480-8180499
TATTAGACTTTTCAAGTTCTTCAAACCATG8180480ACTTCAACTTCTTCGCCAACTTGTACTTGAATGGATGCAGAATGGAACCG
Hypomecis punctinalis genome assembly, chromosome: 21.
OX438815.1:15291459-15291478
TGTTGGATTTTTCTAGCTCTTCAAACCATG15291459ACTTCAACTTCTTCGCCAACTTATATTTGAACGGATGCAGTATAGAACCC
Eristalinus aeneus genome assembly, chromosome: 6.
OY019135.1:3178952-3178971
GCTGGTTTTTCCAAAACAACAGTTTCAGTA3178952ACTTCAACTTCTTCGCCAACCTCATCACCCTCGACAATCTCAATGACGTC
EST00885 Hemp Uni-ZAP XR cDNA library Cannabis sativa cDNA clone P21nr085, mRNA sequence.
EW701145.1:97-116
TTTTCAGTTTTAAGAGTTTAGTGAGTAAAT97GTTGGCGAAGAAGTTGAAGTGACTCACTGCGTTTCTACTCCCCTTCTACT
TSA: Cannabis sativa PK22848.1_1.CasaPuKu mRNA sequence.
JP449857.1:287-306
TTTTCAGTTTTAAGAGTTTAGTGAGTAAAT287GTTGGCGAAGAAGTTGAAGTGACTCACTGCGTTTCTACTCCCCTTCTACT
GUAC5747.g1 GUAC marine metagenome genomic, genomic survey sequence.
KG416921.1:95-114
ACGGGCCGTATCGAACGCGGCATCGTCAAA95GTTGGCGAAGAAGTTGAAGTCGTCGGGATCAGAGACCCCCGCAAAACCAC
Corylus americana cultivar Winkler chromosome 2.
CP125826.1:38755504-38755523
ATTTGACTCCCCAAGTTTAATTGATTCCTT38755504GTTGGCGAAGAAGTTGAAGTTAACTCCTTCAAATTCGCTAGCAGTTGTTG
Corylus avellana genome assembly, chromosome: ca2.
LR899424.1:46370101-46370120
ATTTGACTCCCCAAGTTTAATTGATTCCTC46370101GTTGGCGAAGAAGTTGAAGTTAACTCCTTCAAATTCGCTTGCAGTTGTTG
Ajuga chamaepitys genome assembly, chromosome: 6.
OY282500.1:22605121-22605140
GAATGGGGTAGTAATGCAAACGAAGAATTT22605121GTTGGCGAAGAAGTTGAAGTTCAGGTGGATGATGGCCTAGGAGAAGCAGA
Triglochin maritima genome assembly, chromosome: 6.
OY821775.1:7684853-7684872
GAAAATTTGGTGGAAATTGGAAGAATTTGA7684853GTTGGCGAAGAAGTTGAAGTGATTGTAGAAAATGTGGATGAAGAAAAGGA
Synechococcus sp. CC9902, complete genome.
CP000097.1:1929873-1929892
ACCGGTCGTATCGAGCGTGGCATCGTCAAA1929873GTTGGCGAAGAAGTTGAAGTAGTCGGCATCCGCGACCCCCGTAAAACCAC
Planctomycetota bacterium strain ZRK32 chromosome, complete genome.
CP066225.1:338525-338544
CACATCAGCAAGCCAGCAGACTTTGTGAAG338525GTTGGCGAAGAAGTTGAAGTTAAGGTTCTAAAACTCGACAAGGAAAAAGA
Nebria brevicollis genome assembly, chromosome: 12.
OX122909.1:2324436-2324455
TGTTGTTTTAGTTATTTCAAAGGCGTTGCG2324436GTTGGCGAAGAAGTTGAAGTCGAGGCCAAAACCAAAAAAGCAGGGAAAAA
Apocheima hispidaria genome assembly, chromosome: 20.
OX388164.1:4941344-4941363
CGGTTCTATACTGCATCCGTTCAAATATAA4941344GTTGGCGAAGAAGTTGAAGTCATGGTTTGAAGAGCTAGAGAAATCGAACA
Parasteatoda lunata genome assembly, chromosome: X1.
OX421980.1:40254641-40254660
ATACCTAAAAAAATTTCTTTACTCGAAGAA40254641GTTGGCGAAGAAGTTGAAGTATACACTTGAAGTATTCAATTCATCCAGGC
Xiphydria camelus genome assembly, chromosome: 11.
OY783201.1:21612394-21612413
AGGTACCCAGTTACGTGAGGTTTATTAACC21612394GTTGGCGAAGAAGTTGAAGTACGAAATTAAAAATGTTCAATTGAAACAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTTCAACTTCTTCGCCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCAACTTCTTCGCCAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.384 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCAACTTCTTCGCCAAC&k=0&no_gap=0&offset=0&limit=50
0.624 | 0.240 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGGCGAAGAAGTTGAAGT&k=0&no_gap=0&offset=0&limit=42
0.632 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).