GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:30:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH017_03677m, 5' end sequence.
AB450702.1:49-70
AACAAACCATTTTTCATACACAATACAATT49ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAAAGGGGAAGAGAGAGA
Mdfrt3056O01_e10010.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO550626.1:74-95
AACAAACCATTTTTCATACACAATACAATT74ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAGAGGGAAGAGAGAGAG
TSA: Pyrus x bretschneideri Unigene88397_XinShao mRNA sequence.
JR672101.1:172-193
AACAAACCATTTTTCATACACAATACAATT172ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAAAGGGGAAGAGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:31826770-31826791
AACAAACCATTTTTCATACACAATACAATT31826770ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAGAGGGAAGAGAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:34123195-34123216
AACAAACCATTTTTCATACACAATACAATT34123195ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAGAGGGAAGAGAGAGAG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:32845682-32845703
AACAAACCATTTTTCATACACAATACAATT32845682ACTTCAAGTAGCCAACTATCAGAAATACAGGAGAGAGAGGGAAGAGAGAGAG
021121ABMA002070HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA002070, mRNA sequence.
CN911486.1:547-568
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT547CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Mdfr3008e03.y3 Mdfr Malus domestica cDNA clone Mdfr3008e03 5', mRNA sequence.
CO416548.1:42-63
CTCTCTCTCTTCACTCTCTCTCCTGTATTT42CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Mddb5021d07.y1 Mddb Malus domestica cDNA clone Mddb5021d07 5', mRNA sequence.
CO903145.1:183-204
CTCTCTCTCTTCACTCTCTCTCCTGTATTT183CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATTGTTTGTT
Mdrtp1010L17.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
DT040598.1:472-493
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT472CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Mdrtp1004I07.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
DT040861.1:427-448
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT427CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
001202AAOA004541HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004541, mRNA sequence.
EB119533.1:204-225
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT204CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Mdfrg3158A18.g1 Apple_EST_Mdfrg Malus domestica cDNA 5', mRNA sequence.
GO524893.1:101-122
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT101CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Pyrus pyrifolia mRNA, clone: NFR2_33_26, 5' end sequence, expressed in fruit.
HX750990.1:22-43
TCCCCTTTCTCTCCTGTATTT22CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Pyrus pyrifolia mRNA, clone: NFW2_19_82, 5' end sequence, expressed in flower bud.
HX763529.1:23-44
TTCCCCTTTCTCTCCTGTATTT23CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus x domestica ARF domain class transcription factor (IAA12) mRNA, complete cds.
HM122442.1:1333-1354
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT1333CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:3865207-3865228
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT3865207CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:4240309-4240330
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4240309CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:4230573-4230594
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4230573CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:4180215-4180236
CTCTTTCTCTTCCCTCTCTCTCCTGTATTT4180215CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:4385474-4385495
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4385474CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:4230480-4230501
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4230480CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:4462519-4462540
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4462519CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:4257255-4257276
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4257255CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:4230423-4230444
CTCTCTCTCTTCCCTCTCTCTCCTGTATTT4230423CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:3172447-3172468
TCTCTCTCTCTCTCTCTCTCCCCTGTATTT3172447CTGATAGTTGGCTACTTGAAGTAATTGTATTGTGTATGAAAAATGGTTTGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTTCAAGTAGCCAACTATCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCAAGTAGCCAACTATCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.413 | 0.405 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCAAGTAGCCAACTATCAG&k=0&no_gap=0&offset=0&limit=50
1.235 | 0.822 | search_minus_done; http://172.18.8.135:50400/match?q=CTGATAGTTGGCTACTTGAAGT&k=0&no_gap=0&offset=0&limit=44
1.247 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).