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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:05:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens chromosome 18, clone CTD-2301P8, complete sequence.
AC105110.6:22667-22686
TGCTCAGTATTTTTGGACTCTGATAACACC22667ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTCCTAC
Homo sapiens chromosome 18, clone RP11-60G10, complete sequence.
AC108452.3:436-455
TGCTCAGTATTTTTGGACTCTGATAACACC436ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTCCTAC
Macaca fascicularis complete genome, chromosome chr1.
LT160000.1:226075623-226075642
ACATCCCCTTCTTTATCTGTTTTAGAAGAA226075623ACTTCCTCCCTTTCCTTCCACTCTGGCTCCACCCTCACCCATGACTCTTC
Capricornis sumatraensis isolate serow.1 chromosome 8.
CP135634.1:34872771-34872790
GCTGTCTAAGATGTTTCCTAGCCCACGTCT34872771ACTTCCTCCCTTTCCTTCCATCAGTGTCAGATTGCATCCTGATCTAAAGG
Cervus elaphus genome assembly, chromosome: 2.
OU343079.1:34361603-34361622
GCTGTCTGAGATGCTTCCTAGCCCATGTCT34361603ACTTCCTCCCTTTCCTTCCATCAGTGTCAGATTGCATCCTGATCTAAAGG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 28.
OX596112.1:34925260-34925279
GCTGTCTGAGATGCTTCCTAGCCCATGTCT34925260ACTTCCTCCCTTTCCTTCCACCAGTGTCAGATTGCATCCTGATCTAAAGG
Dianthus caryophyllus mRNA, clone: CES04M19, 5' end sequence.
FY383907.1:22-41
GCAATCCTCCACACACATACA22ACTTCCTCCCTTTCCTTCCAACCACCCTAACCCTCCATGACAACCACCAA
RPCI11-60G10.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-60G10, genomic survey sequence.
AQ195688.1:431-450
TGCTCAGTATTTTTGGACTCTGATAACACC431ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTCCTAC
RPCI11-45K17.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-45K17, genomic survey sequence.
AQ200175.1:443-462
TGCTCAGTATTTTTGGACTCTGATAACACC443ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTCCTAC
RPCI11-60H9.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-60H9, genomic survey sequence.
AQ202168.1:436-455
TGCTCAGTATTTTTGGACTCTGATAACACC436ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTGCTAC
SHGC-85525 Human Homo sapiens STS genomic, sequence tagged site.
G61217.1:431-450
TGCTCAGTATTTTTGGACTCTGATAACACC431ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTCCTAC
SHGC-85488 Human Homo sapiens STS genomic, sequence tagged site.
G61332.1:436-455
TGCTCAGTATTTTTGGACTCTGATAACACC436ACTTCCTCCCTTTCCTTCCACCAGCTCTAGGAGTGGTGGATGTTTGCTAC
Secale cereale genome assembly, chromosome: 7R.
LR738715.1:679938208-679938227
CCTTGAGGAGGGGAAGGAAGGAGGGGCAAG679938208ACTTCCTCCCTTTCCTTCCATAGGACCGGCCAGCCAGGTGGAGGGGCGCA
Coremacera marginata genome assembly, chromosome: 1.
OU612043.1:92327110-92327129
CCAAGATTTTTAACCGTTTTAATTTTCAAT92327110ACTTCCTCCCTTTCCTTCCAATCTATTATCTAATTTTCGAATCAAGGCAG
Andrena minutula genome assembly, chromosome: 2.
OV815994.1:10443663-10443682
CACCTTATGAACCTCTCCTGTACCCTCTCC10443663ACTTCCTCCCTTTCCTTCCATCCCCATATTTCCGCTACATATCCTAACAC
Platycnemis pennipes genome assembly, chromosome: 8.
OW121854.1:36057441-36057460
CAAGGACGATTCCGAGTGCTCCGCTCATCC36057441ACTTCCTCCCTTTCCTTCCACTCCTCATCGGTAACCCCATACACATTCCA
Andrena hattorfiana genome assembly, chromosome: 2.
OX122890.1:30219332-30219351
CACCTTATATACCTCTCCTGTACCCTCTCA30219332ACTTCCTCCCTTTCCTTCCACCCCCATATCTTTGCTCCATACCCCAACAC
Andrena hattorfiana genome assembly, chromosome: 3.
OX122891.2:16295716-16295735
CACCTTATATACCTCTCCTGTACCCTCTCA16295716ACTTCCTCCCTTTCCTTCCACCCCCAGATCTCTGCTCCATACCCCAACAC
Andrena hattorfiana genome assembly, chromosome: 6.
OX122894.2:20748496-20748515
CACCTTATATACCTCTCCCGTACCCTCTCA20748496ACTTCCTCCCTTTCCTTCCACCCCCAGATCTCTGCTCCATACCCCAACAC
Andrena fulva genome assembly, chromosome: 2.
OX276328.1:28850523-28850542
CACCTTATGAATCTCTCCTGTACCCTCTCC28850523ACTTCCTCCCTTTCCTTCCATCCCCATACTTCTGCTCCATATCCTAACAC
Andrena fulva genome assembly, chromosome: 5.
OX276331.1:13102613-13102632
CACCTTATGAATCTCTCCTGTACCCTCTCC13102613ACTTCCTCCCTTTCCTTCCATCCCCATACTTCTGCTCCATATCCTAACAC
Andrena bucephala genome assembly, chromosome: 2.
OX387716.1:95322032-95322051
CACCTTATAAATCTCTCCTGTATCCTCTCC95322032ACTTCCTCCCTTTCCTTCCACCCCCATACCTCTGCCCCGTAACCCACCAC
Andrena bicolor genome assembly, chromosome: 1.
OY482664.1:20280108-20280127
CACCTTAGAAACCTCTCCTGTACCCTCTCC20280108ACTTCCTCCCTTTCCTTCCATCCCCAAATTTCCGCTCCATAACTCAGCAC
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:82323185-82323204
TGATTTAAATCTACAGTATAAAAATTATTT82323185ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:96187861-96187880
TGATTTAAATCTACAGTATAAAAATTATTT96187861ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:269733396-269733415
TGATTTTAATCTACAGTATAAAAATTATTT269733396ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:269744684-269744703
TGATTTTAATCTACAGTACAAAAATTATTT269744684ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:284474821-284474840
TGATTTTAATCTACAGTACAAAAATTATTT284474821ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCTT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:61278645-61278664
TGATTTTAATCTACAGTACAAAAATTATTT61278645ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:102569938-102569957
TGATTTTAATCTACAGTACAAAAATTATTT102569938ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:131286609-131286628
TGATTTTAATCTACAGTACAACAATTATTT131286609ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:136864794-136864813
TGATTTAAATCTACAGTACAAAAATTATTT136864794ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:204798045-204798064
TGATCTAAATCTACAGTACAAAAATTATTT204798045ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:239411364-239411383
TGATTTTAATCTACAGTACAAAAATTATTT239411364ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Chorisops tibialis genome assembly, chromosome: 3.
OY770264.1:73109828-73109847
TGATTTAAATCTACAGTACAAAAATTATTT73109828ACTTCCTCCCTTTCCTTCCACCCCCTCCCATACAAACTACACTTTTTCCT
Andrena chrysosceles genome assembly, chromosome: 1.
OY979766.1:62492102-62492121
CACCTTATATACGTCTCCTGTACCCTCTCC62492102ACTTCCTCCCTTTCCTTCCACCCCAGACCTCTGCTCCATACCCCATCACC
Andrena marginata genome assembly, chromosome: 2.
OZ010660.1:12909026-12909045
CACCTTATATACCTCTCCTGTACCCTCTGA12909026ACTTCCTCCCTTTCCTTCCACCCCCTGATCTCTGCTTCATACTCAACACC
Andrena marginata genome assembly, chromosome: 3.
OZ010661.1:27930759-27930778
CACCTTATATACCTCTCCTGTACTCTCTCC27930759ACTTCCTCCCTTTCCTTCCACCCCCAGATCTCTGCTCCATACCCCATAAA
Andrena marginata genome assembly, chromosome: 4.
OZ010662.1:27113433-27113452
CACCTTATATACCTCTCCTCTACCGTCTCA27113433ACTTCCTCCCTTTCCTTCCACCCCAAATCTCTGTTCTACACCCAAACAAC
Andrena praecox genome assembly, chromosome: 2.
OZ010729.1:24417599-24417618
CACCCTTAACTATACTCCTGTACCCTTTCA24417599ACTTCCTCCCTTTCCTTCCACCCCCTGATCTCTGCTCCATACCCCAACAC
Homo sapiens DNA, chromosome 18, nearly complete genome.
AP023478.1:35426615-35426634
GTAGGAAACATCCACCACTCCTAGAGCTGG35426615TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Homo sapiens isolate CHM13 chromosome 18.
CP068260.2:38206486-38206505
GTAGGAAACATCCACCACTCCTAGAGCTGG38206486TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Homo sapiens isolate NA24385 chromosome 18.
CP139525.1:36762421-36762440
GTAGGAAACATCCACCACTCCTAGAGCTGG36762421TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Homo sapiens isolate NA24385 chromosome 18.
CP139548.1:38433825-38433844
GTAGGAAACATCCACCACTCCTAGAGCTGG38433825TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Apodemus sylvaticus genome assembly, chromosome: 18.
OX359315.1:27096469-27096488
GAAAGAGAGGGAAAGTGGTGAAAGGGAGGA27096469TGGAAGGAAAGGGAGGAAGTGAGGAAAGAAATCAGAAAACAGGACGGGAA
Ovis canadensis canadensis isolate 43U chromosome 21 sequence.
CP011906.1:15040659-15040678
CCCTTTAGATCAGGTGCAATCTGACACTGA15040659TGGAAGGAAAGGGAGGAAGTAGACGTGGGCTAGGAAGCATCTTAGACAGC
Rangifer tarandus platyrhyncus genome assembly, chromosome: 26.
OX459962.2:22623742-22623761
CCTTTAGATCAGGATGCAATCTGACACTGG22623742TGGAAGGAAAGGGAGGAAGTAGACATGGGCTAGGAAGCATCTCAGACAGC
Muntiacus reevesi genome assembly, chromosome: 5.
OZ005629.1:15243517-15243536
CCTTTAGATCAGGATGCAATCTGACACTGA15243517TGGAAGGAAAGGGAGGAAGTAGACATGGACTAGGAAGGATCTCAGACAGC
Myripristis murdjan genome assembly, chromosome: 16.
LR597565.1:24057342-24057361
AATTGGAGAGATAGGAAAGCAAAGCAATGC24057342TGGAAGGAAAGGGAGGAAGTTGGAAGAAAAAGAAAGGCAGTCCTATATCA
Eukaryotic synthetic construct chromosome 18.
CP034496.1:35582344-35582363
GTAGGAAACATCCACCACTCCTAGAGCTGG35582344TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Eukaryotic synthetic construct chromosome 18.
CP034521.1:35582344-35582363
GTAGGAAACATCCACCACTCCTAGAGCTGG35582344TGGAAGGAAAGGGAGGAAGTGGTGTTATCAGAGTCCAAAAATACTGAGCA
Andrena minutula genome assembly, chromosome: 4.
OV815996.1:14429159-14429178
GTGTTAGGATATGGAGCGGAAATATGGGGA14429159TGGAAGGAAAGGGAGGAAGTGGAGAGGGTACAGGAGAGGTTCATAAGGTG
Andrena hattorfiana genome assembly, chromosome: 2.
OX122890.1:25690435-25690454
GTGTTGGGGTATGGAGCAGAAATCTGGGGG25690435TGGAAGGAAAGGGAGGAAGTTGAGAGGGTACAGGATAGGTATATAAGGTG
Andrena hattorfiana genome assembly, chromosome: 2.
OX122890.1:30208808-30208827
GTGTTGGGGTATGGAGCAAAGATATGGGGG30208808TGGAAGGAAAGGGAGGAAGTTGAGAGGGTACAGGAGAGGTATATAAGGTG
Andrena trimmerana genome assembly, chromosome: 4.
OX578062.1:16886070-16886089
GTATTGGGGTACGGGGCGGAAGTATGGGGG16886070TGGAAGGAAAGGGAGGAAGTGGAGAGGGTACAAGAAAGGTTCATAAGGTG
Andrena bicolor genome assembly, chromosome: 4.
OY482667.1:23179812-23179831
GTGCTGAGTTATGGAGCGGAAATTTGGGGA23179812TGGAAGGAAAGGGAGGAAGTGGAGAGGGTACAGGAGAGGTTTCTAAGGTG
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:89091790-89091809
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG89091790TGGAAGGAAAGGGAGGAAGTAAATAATTTTTATACTGTAGATTTAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:93078906-93078925
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG93078906TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:106531628-106531647
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG106531628TGGAAGGAAAGGGAGGAAGTAAATAATTTTTATACTGTAGATTTAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:111509576-111509595
AGGAAAAAGTGTAGTTTGTATGAGAGGGGG111509576TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:232426840-232426859
AGGATAAAGTGTAGTTTGTATGGGAGGGGG232426840TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:249701984-249702003
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG249701984TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:262641900-262641919
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG262641900TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAAATCA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:322527901-322527920
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG322527901TGGAAGGAAAGGGAGGAAGTAAATAATTTTTGTACTGTAGATTAAGATCA
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:18725657-18725676
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG18725657TGGAAGGAAAGGGAGGAAGTAAATAATTTTTATACTGTAGATTTAAATCA
Chorisops tibialis genome assembly, chromosome: 2.
OY770263.1:57278381-57278400
AGGAAAAAGTGTAGTTTGTATGGGAGGGGG57278381TGGAAGGAAAGGGAGGAAGTAAATAATTTTTATACTGTAGATTTAAATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTTCCTCCCTTTCCTTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCCTCCCTTTCCTTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.221 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCCTCCCTTTCCTTCCA&k=0&no_gap=0&offset=0&limit=50
0.474 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAAGGAAAGGGAGGAAGT&k=0&no_gap=0&offset=0&limit=10
0.491 | 0.017 | cgi_end;

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