GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 17:56:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CSATR1JP-T3-026_L08_19DEC2008_022 CSATR1JP Cannabis sativa cDNA, mRNA sequence.
JK497676.1:34-53
TTGGTTTCTTAAAGCTTTTTCATGGAAACA34ACTTCTTCTACTCAGGCCCCACTTCCAACCTCATCTTCATCTTCATCTTC
TSA: Cannabis sativa PK11736.1_1.CasaPuKu mRNA sequence.
JP449800.1:26-45
TTCTTAAAGCTTTTTCATGGAAACA26ACTTCTTCTACTCAGGCCCCACTTCCAACCTCATCTTCATCTTCATCTTC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq1.
LA449122.1:1406-1425
AAGTAACGGAGTGAAGAGGACCTTGGAAGT1406GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq2.
LA449123.1:2745-2764
AAGTAACGGAGTGAAGAGGACCTTGGAAGT2745GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq3.
LA449124.1:1651-1670
AAGTAACGGAGTGAAGAGGACCTTGGAAGT1651GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq4.
LA449125.1:3032-3051
AAGTAACGGAGTGAAGAGGACCTTGGAAGT3032GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq5.
LA449126.1:2121-2140
AAGTAACGGAGTGAAGAGGACCTTGGAAGT2121GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp286113_c0_seq6.
LA449127.1:3656-3675
AAGTAACGGAGTGAAGAGGACCTTGGAAGT3656GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA
Humulus lupulus genome assembly, chromosome: X.
OY720650.1:205877451-205877470
AAGTAACGGAGTGAAGAGGACCTTGGAAGT205877451GGGGCCTGAGTAGAAGAAGTTGTTTCCATAAGAATCCAAACCCTAGCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACTTCTTCTACTCAGGCCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCTTCTACTCAGGCCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.248 | 0.239 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCTTCTACTCAGGCCCC&k=0&no_gap=0&offset=0&limit=50
0.402 | 0.154 | search_minus_done; http://172.18.8.135:50400/match?q=GGGGCCTGAGTAGAAGAAGT&k=0&no_gap=0&offset=0&limit=48
0.407 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).