GGGenome | Results

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2025-04-09 13:09:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Porphyra yezoensis cDNA, clone:PFL008a08_r, 5'end.
AU190842.1:97-116

TCTTTGAGACCACCGTGCCGCACCTACCCG97ACTTGTCCATCATGGCGTTTGTGGGCGCTGCCGTTGGCGATCGCGGCGCG

Porphyra yezoensis cDNA, clone:PFL094g02_r, 5'end.
AU196781.1:107-126

TCTTTGAGACCACCGTGCCGCACCTACCCG107ACTTGTCCATCATGGCGTTTGTGGGCGCTGCCGTTGGCGATCGCGGCGCG

Porphyra yezoensis cDNA, clone:PFL095h09_r, 5'end.
AU196855.1:107-126

TCTTTGAGACCACCGTGCCGCACCTACCCG107ACTTGTCCATCATGGCGTTTGTGGGCGCTGCCGTTGGCGATCGCGGCGCG

Phorcus lineatus genome assembly, chromosome: 11.
OV121091.1:6287272-6287291

GCCTAGTTGTAGGAGTAGGGAACTTGTCAC6287272AAACGCCATGATGGACAAGTCCACCTCTGTTAAAAAAAAACACGATTACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTGTCCATCATGGCGTTT&k=0&no_gap=0&offset=0&limit=50
0.169 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=AAACGCCATGATGGACAAGT&k=0&no_gap=0&offset=0&limit=47
0.169 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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