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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:28:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Camellia sinensis tea_rep_c748 mRNA sequence.
KA280190.1:1131-1150
CCGAAGTGCCGATCGGCTGCCTCTCTGGGA1131ACTTGTTGGCTCCTAATCTCACATCTTCTTCTTTCCCTTCCATATCTCTC
TSA: Camellia sinensis tea_rep_c8452 mRNA sequence.
KA287826.1:1265-1284
CCGAAGTGCCGATCGGCTGCCTCTCTGGGA1265ACTTGTTGGCTCCTAATCTCACATCTTCTTCTTTCCCTTCCATCTCTCTC
Camellia sinensis mRNA, clone: RT30A04S, expressed in root, unspecified EST.
AB505868.1:113-132
GAGAGAGATGGAAGGGAAAGAAGAAGATGT113GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
TL001G12 Young leaf cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA clone TL001G12 5', mRNA sequence.
CV013588.1:114-133
GAGAGAGATGGAAGGGAAAGAAGAAGATGT114GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Camellia sinensis mRNA, clone: YL05A11, 5' end sequence, expressed in young leaves.
FS958867.1:100-119
GAGAGAGATGGAAGGGAAAGAAGAAGATGT100GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
EST0529 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_01_21.M13+_E03.ab1, mRNA sequence.
GE650202.1:131-150
GAGAGAGATGGAAAGGAAAGAAGAAGATGT131GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
EST0996 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_07_65.M13+_A09.ab1, mRNA sequence.
GE650669.1:131-150
GAGAGAGATGGAAGGGAAAGAAGAAGATGT131GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
EST1113 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_25.M13+_A04.ab1, mRNA sequence.
GE650786.1:131-150
GAGAGAGATGGAAGGGAAAGAAGAAGATGT131GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
EST1128 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_41.M13+_A06.ab1, mRNA sequence.
GE650801.1:129-148
GAGAGAGATGGAAGGGGAAGAAGAAGATGT129GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
EST3409 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone OUYI_CG_62.M13+_F08, mRNA sequence.
GE653082.1:82-101
GAGAGAGATGGAAGGGAAAGAAGAAGATGT82GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Tea219_2006-02-15_1/Tea219_H11_041_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476549.1:120-139
GAGAGAGATGGAAGGGAAAGAAGAAGATGT120GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
TSA: Camellia sinensis tea_rep_c2662 mRNA sequence.
KA282090.1:1793-1812
GAGAGATATGGAAGGGAAAGAAGAAGATGT1793GAGATTAGGAGCCAACAAGTTACCCAGAGAGGCAGCCGATCGGCACGTTC
Swietenia macrophylla isolate HCNGB_00002344 chromosome 14.
CP135564.1:5446764-5446783
TTGTGGATGGAAGTCATGAAAACTAAATGA5446764GAGATTAGGAGCCAACAAGTCCGTCAGTTCCACCTAGGAAGTTTACCCTA
Camellia oleifera clone 6186-1 aquaporin mRNA, complete cds.
EU850810.1:129-148
GAGAGAGATGGAAGGGAAAGAAGAAGATGT129GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Camellia oleifera clone 6186-2 aquaporin mRNA, complete cds.
EU850811.1:113-132
GAGAGAGATGGAAGGGAAAGAAGAAGATGT113GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Camellia sinensis aquaporin protein 3 mRNA, complete cds.
KC008718.1:119-138
GAGAGAGATGGAAGGGAAAGAAGAAGATGT119GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Camellia sinensis aquaporin protein AQU17 mRNA, complete cds.
KC215410.1:118-137
GAGAGAGATGGAAGGGAAAGAAGAAGATGT118GAGATTAGGAGCCAACAAGTTCCCAGAGAGGCAGCCGATCGGCACTTCGG
Spergularia bocconei genome assembly, chromosome: 9.
OY734950.1:18661730-18661749
AAACCGTCGTATGTAGGCCATAAAGAGTTA18661730GAGATTAGGAGCCAACAAGTTTAAAAAGGCAGTGAAGCCCGTTTGAAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTTGTTGGCTCCTAATCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTGTTGGCTCCTAATCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.206 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTGTTGGCTCCTAATCTC&k=0&no_gap=0&offset=0&limit=50
1.131 | 0.925 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATTAGGAGCCAACAAGT&k=0&no_gap=0&offset=0&limit=48
1.141 | 0.010 | cgi_end;

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