GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:15:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-050I24, 5' end sequence.
DK474870.1:198-222
CCTCATTCTTCATCTTACAATCTTTCAATC198AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
47RDOAH_UP_061_E06_30JAN2006_040 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES940801.1:58-82
CCTCATTCTTCATCTTACAATCTTTCAATC58AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
0127810 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV122498.1:132-156
CCTCATTCTTCATCTTACAATCTTTCAATC132AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44598285-44598309
CCTCATTCTTCATCTTACAATCTTTCAATC44598285AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43696388-43696412
CCTCATTCTTCATCTTACAATCTTTCAATC43696388AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
BOHOA22TR BOHO Brassica oleracea genomic clone BOHOA22, genomic survey sequence.
BH468790.1:214-238
ATGGCTGTGCCGCTGTAGAGAGTCACGGCG214CCTTGGTCATGATCCGCCATTTTCTGATTGAAAGATTGTAAGATGAAGAATGAGG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8778735-8778759
ATGGCTGTGCCGCTGTAGAGAGTCACGGCG8778735CCTTGGTCATGATCCGCCATTTTCTGATTGAAAGATTGTAAGATGAAGAATGAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAAAATGGCGGATCATGACCAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAAATGGCGGATCATGACCAAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.250 | 0.242 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAAATGGCGGATCATGACCAAGG&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGGTCATGATCCGCCATTTTCT&k=0&no_gap=0&offset=0&limit=45
0.291 | 0.001 | cgi_end;

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