GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 23:35:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:10862109-10862130
TCTTAAGCATGTTCTTGAAGTAACACCTCC10862109AGAAACAAGAATCCGAGCGGTATGGTGTCTTACAAAACTGACTTGGATGGAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:4919398-4919419
TCTTAAGCATGCTCTTCAAGTAACACCTCC4919398AGAAACAAGAATCCGAGCGGTATGGTCAAATGGCATGTGGAAAGAATCAAGA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:4919398-4919419
TCTTAAGCATGCTCTTCAAGTAACACCTCC4919398AGAAACAAGAATCCGAGCGGTATGGTCAAATGGCATGTGGAAAGAATCAAGA
RS2AC58JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728187.1:521-542
GAGAAAGGCTATTTTCTAAAAAAATATTTA521TACCGCTCGGATTCTTGTTTCTAGAGGTGTTACTTGAAGAGCATGCTTAAGA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:45545650-45545671
ATCCATCCAAGTCAGTTTTGTAAGACACCA45545650TACCGCTCGGATTCTTGTTTCTGGAGGTGTTACTTCAAGAACATGCTTAAGA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:44186223-44186244
ATCCATCCAAGTCAGTTTTGTAAGACACCA44186223TACCGCTCGGATTCTTGTTTCTGGAGGTGTTACTTCAAGAACATGCTTAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAAACAAGAATCCGAGCGGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAACAAGAATCCGAGCGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAACAAGAATCCGAGCGGTA&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=TACCGCTCGGATTCTTGTTTCT&k=0&no_gap=0&offset=0&limit=47
0.180 | 0.002 | cgi_end;

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