GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BOGJL79TR BOGJ Brassica oleracea genomic clone BOGJL79, genomic survey sequence.
BH424163.1:178-197

GAAGTCTCCTCCTTCTCTTCTCTTCCATTT178AGAAATCAGAGCGAAGCCCTGCATAGTTCCAGAGAGATTTAAAAACCCTA

BOGWS96TR BOGW Brassica oleracea genomic clone BOGWS96, genomic survey sequence.
BH472860.1:506-525

GGAGTCTTCTTCTTATTTTCTCTTCCATTT506AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

BOMDT35TF BO_2_3_KB Brassica oleracea genomic clone BOMDT35, genomic survey sequence.
BH668728.1:424-443

TGAGCCTCCTCCTTCTCTTCTCTCCCATTT424AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGATATCTGAAAACCCCA

jnr70e10.g1 B.oleracea001 Brassica oleracea genomic, genomic survey sequence.
BZ052171.1:147-166

TGAGCCTCCTCCTTCTCTTCTCTCCCATTT147AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGATATCTGAAAACCCCA

BONFE36TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONFE36, genomic survey sequence.
BZ438239.1:107-126

GGAGCCTCCTTCTTCTTTTCTCTTCCATTT107AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

BONFE44TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONFE44, genomic survey sequence.
BZ460523.1:126-145

GGAGCCTCCTTCTTCTTTTCTCTTCCATTT126AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

BOMQY86TR BO_2_3_KB Brassica oleracea genomic clone BOMQY86, genomic survey sequence.
BZ512613.1:161-180

GGAGCCTCCCCCTTCTATTCTCTCCCATTT161AGAAATCAGAGCGAAGCCCTACAGAGTTCCAGAGAGATCTGAAAACCCTA

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:26084545-26084564

GGAGCCTCCCCCTTCTATTCTCTCCCATTT26084545AGAAATCAGAGCGAAGCCCTACAGAGTTCCAGAGAGATCTGAAAACCCTA

Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:42729939-42729958

AGGAGCATCCTTTTTTTTTCTCTTCCATTT42729939AGAAATCAGAGCGAAGCCCTGCATTTCTCTTTTCTCTTCTCTCTCTCTCT

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:50667006-50667025

GAAGTCTCCTCCTTCTCTTCTCTTCCATTT50667006AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:59914631-59914650

AGAGCCTCCTTCTTCTCTTCTCTCCCATTT59914631AGAAATCAGAGCGAAGCCCTGCCGAGTTTCAGAGAGCTCTGAAAACCCTA

Brassica napus genome assembly, chromosome: A07.
HG994361.1:1906886-1906905

AAAGTCATCCACTTTTCTTCTCTCCCATTT1906886AGAAATCAGAGCGAAGCCCTACAGAGTTCCAGAGAGATCTGTAAATCCTA

Brassica napus genome assembly, chromosome: C07.
HG994371.1:10030620-10030639

GAAGTCATCCCCTTCTCTTCTCTTCCATTT10030620AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATCTGAAAACCCTA

Brassica napus genome assembly, chromosome: C09.
HG994373.1:7956708-7956727

GGAGCCTCCTCCTTCTCTTATCTCCCATTT7956708AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATCTAAAAACCCCA

Brassica rapa genome, scaffold: A06.
LR031569.1:12718505-12718524

GGAGTCTCCTCTTTCTTTTCTCTTCCATTT12718505AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGATTTGAAAACCCTAGC

Brassica rapa genome, scaffold: A01.
LR031571.1:20644061-20644080

GAAGTCATCCCTTTCTCTTCTCTCCGATTT20644061AGAAATCAGAGCGAAGCCCTGCCGAATTCAAGAGAGATCTGAAAACCCTA

Brassica rapa genome, scaffold: A01.
LR031571.1:20647504-20647523

GAAGTCATCCCCTTCTCTTCTCTCCCATTT20647504AGAAATCAGAGCGAAGCCCTGCCGAATTCAAGAGAGATCTGAAAACCCTA

Brassica rapa genome, scaffold: A07.
LR031574.1:1897075-1897094

AAAGTCATCCACTTTTCTTCTCTCCCATTT1897075AGAAATCAGAGCGAAGCCCTACAGAGTTCCAGAGAGATCTGTAAATCCTA

Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:1036347-1036366

GGAGCCTCCTTCATCTTTTCTCTTCCATTT1036347AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:37058835-37058854

GGAGCCTCCTCCTTCTCTTCTCTCCCATTT37058835AGAAATCAGAGCGAAGCCCTGCAAAGATCCAGAGAGATCTGAAAACCCTA

Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7956652-7956671

GGAGCATCCTCCTTCTCTTCTCTCCCATTT7956652AGAAATCAGAGCGAAGCCCTGTAGAGTTCCAGAGAGATCTGAAAACCCCA

Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7958879-7958898

TGAGCCTCCTCCTTCTCTTCTCTCCCATTT7958879AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGATATCTGAAAACCCCA

Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:11330184-11330203

GAAGTCATCCCCTTCTCTTCTCTTCCATTT11330184AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATCTGAAAACCCTA

Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:19905671-19905690

GGAGTCTTCTTCTTATTTTCTCTTCCATTT19905671AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGAGATTTGAAAACCCTA

Brassica rapa genome assembly, chromosome: A06.
LS974622.2:13567466-13567485

GGAGTCTCCTCTTTCTTTTCTCTTCCATTT13567466AGAAATCAGAGCGAAGCCCTGCAGAGTTCCAGAGATTTGAAAACCCTAGC

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:1907919-1907938

AAAGTCATCCACTTTTCTTCTCTCCCATTT1907919AGAAATCAGAGCGAAGCCCTACAGAGTTCCAGAGAGATCTGTAAATCCTA

BOGTT40TF BOGT Brassica oleracea genomic clone BOGTT40, genomic survey sequence.
BH502161.1:189-208

TAGGGTTTTCAGATCTCTCTGGAACTTTGC189AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGGGGAGGCTCC

BOHSK22TR BOHS Brassica oleracea genomic clone BOHSK22, genomic survey sequence.
BH558666.1:388-407

TGGGGTTTTCAGATCTCTCTGGAACTCTAC388AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGAGGATGCTCC

BOMEX77TR BO_2_3_KB Brassica oleracea genomic clone BOMEX77, genomic survey sequence.
BH704534.1:20-39

GATCTCTCTGGAACTCTGC20AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAGAGAAGGGGATGACTTC

odg94g09.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH956151.1:537-556

TAGGGTTTTCAAATCTCTCTGGAACTCTGC537AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGAAGGAGGCTCC

lle28b05.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ084566.1:50-69

CTGTGGTGGAATCTCTCTCTGGAACTTTGC50AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGGGGAGGCTCC

BONRK48TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK48, genomic survey sequence.
BZ455171.1:641-660

TAGGGTTTTCAAATCTCTCTGGAACTCTGC641AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAATAAGAAGAAGACTCC

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 134 unordered pieces.
FJ789657.1:172515-172534

GCTAGGGTTTTCAAATCTCTGGAACTCTGC172515AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAAGAGGAGACTCC

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:28941738-28941757

TAGGGTTTTCAAATCTCTCTGAAACTCTGC28941738AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGGAGGAGGCTCC

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:28943559-28943578

TAGGGTTTTCAAATCTCTCTGAAACTCTGT28943559AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGGAGGAGGCTCC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:34251187-34251206

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34251187AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAAGAGAAGGAGACGGCTCC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:34252907-34252926

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34252907AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAATAGAAGGAGGCTGCTCC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:42557456-42557475

TAGGGTTTTCAGATCTCTCTTGAATTCGGC42557456AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGGGATGACTTC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:42560945-42560964

TAGGGTTTTCAGATCTCTCTTGAATTCGGC42560945AGGGCTTCGCTCTGATTTCTAAATCGGAGAGAAGAGAAAGGGATGACTTC

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:32070310-32070329

TAGGGTTTTCAAATATCTCTGGAACTCTGC32070310AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGGAGGAGGCTCC

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61139959-61139978

TGGGGTTTTTAGATCTCTCTGGAACTCTGC61139959AGGGCTTCGCTCTGATTTCTAAATGGGAGATAAGAGAAGGAGGAGGCTCC

Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:10916742-10916761

TAGGGTTTTCAAATCTCTCTGGAACTCTGC10916742AGGGCTTCGCTCTGATTTCTAAATGGAAAAGAAAAGAAGGAGGAGGCTCC

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:51766691-51766710

TAGGGTTTTCAGATCTCTCTGGAACTCTGC51766691AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAGAGAAGGGGATGACTTC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:34316838-34316857

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34316838AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAAGAGAAGGAGACGGCTCC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:34318548-34318567

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34318548AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAATAGAAGGAGGCTGCTCC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:35788340-35788359

TAGGGTTTTCAGATCTCTCTTGAATTCGGC35788340AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGGGATGACTTC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:35791797-35791816

TAGGGTTTTCAGATATCTCTTGAATTCGGC35791797AGGGCTTCGCTCTGATTTCTAAATCGGAGAGAAGAGAAAGGGATGACTTC

Brassica napus genome assembly, chromosome: C01.
HG994365.1:13821282-13821301

AGAGAGAGAGAGAAGAGAAAAGAGAAATGC13821282AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAAAAAAGGATGCTCCT

Brassica napus genome assembly, chromosome: C07.
HG994371.1:1839392-1839411

TAGGGTTTTCAGAGCTCTCTGAAACTCGGC1839392AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGAAGGAGGCTCT

Brassica napus genome assembly, chromosome: C08.
HG994372.1:3887542-3887561

TAGGGTTTTCAAATCTCTCTGGAACTCTGC3887542AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAGAGAAGGAGGAGACTTC

Brassica rapa genome, scaffold: A03.
LR031572.1:34189931-34189950

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34189931AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAAGAGAAGGAGACGGCTCC

Brassica rapa genome, scaffold: A03.
LR031572.1:34191635-34191654

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34191635AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAATAGAAGGAGGCTGCTCC

Brassica rapa genome, scaffold: A08.
LR031575.1:1249023-1249042

TAGGGTTTTCAAATCTCTCTGAAACTCTGC1249023AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGGAGGAGGCTCC

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:3957709-3957728

TAGGGTTTTCAAATCTCTCTGGAACTCTGC3957709AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAGAGAAGGAGGAGACTTC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:34288818-34288837

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34288818AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAAGAGAAGGAGACGGCTCC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:34290518-34290537

TAGGGTTTTCAGATCTCTCTGGAACTCGGC34290518AGGGCTTCGCTCTGATTTCTAAATGGGTGAGAATAGAAGGAGGCTGCTCC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:37053464-37053483

TAGGGTTTTCAGATCTCTCTTGAATTCGGC37053464AGGGCTTCGCTCTGATTTCTAAATGGGAGAGAAGAGAAGGGGATGACTTC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:37056925-37056944

TAGGGTTTTCAGATCTCTCTTGAATTCGGC37056925AGGGCTTCGCTCTGATTTCTAAATCGGAGAGAAGAGAAAGGGATGACTTC

Brassica rapa genome assembly, chromosome: A08.
LS974624.2:1267203-1267222

TAGGGTTTTCAAATCTCTCTGAAACTCTGC1267203AGGGCTTCGCTCTGATTTCTAAATGGAAGAGAAAAGAAGGAGGAGGCTCC

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Debug Info:

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAATCAGAGCGAAGCCCT&k=0&no_gap=0&offset=0&limit=50
0.338 | 0.135 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGCTTCGCTCTGATTTCT&k=0&no_gap=0&offset=0&limit=24
0.361 | 0.022 | cgi_end;

Summary:

Results:

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