GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

030130ABPB003016HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003016, mRNA sequence.
EB152041.1:70-91

TTCGCTATCAAATCTTAAGAGAATTAGATT70AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:24321980-24322001

TTCGCTATCAAATCTTAAGAGAATTAGATT24321980AGAACGTATTTCAATTCCTCCCATAAGCAGGGTCCTTAAACAGTTGAAAAGC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:24407371-24407392

TTCGCTATCAAATCTTAAGAGAATTAGATT24407371AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:21564986-21565007

TTCGCTATCAAATCTTAAGAGAATTAGATT21564986AGAACGTATTTCAATTCCTCCCATAAGCAAGGTTCTTAAACAGTTGAAAAGC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:21635410-21635431

TTCGCTATCAAATCTTAAGAGAATTAGATT21635410AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGT

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:21746929-21746950

TTCGCTATCAAATCTTAAGAGAATTAGATT21746929AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:23984937-23984958

TTCGCTATCAAATCTTAAGAGAATTAGATT23984937AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:24063772-24063793

TTCGCTATCAAATCTTAAGAGAATTAGATT24063772AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTGAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU696691.1:24199828-24199849

TTCGCTATCAAATCTTAAGAGAATTAGATT24199828AGAACGTATTTCAATTCCTCCCATAAGCAGGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU696691.1:24274061-24274082

TTCGCTATCAAATCTTAAGAGAATTAGATT24274061AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU696691.1:24394211-24394232

TTCGCTATCAAATCTTAAGAGAATTAGATT24394211AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU744556.1:24158301-24158322

TTCGCTATCAAATCTTAAGAGAATTAGATT24158301AGAACGTATTTCAATTCCTCCCATAAGCAGGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU744556.1:24243691-24243712

TTCGCTATCAAATCTTAAGAGAATTAGATT24243691AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU744967.1:24125666-24125687

TTCGCTATCAAATCTTAAGAGAATTAGATT24125666AGAACGTATTTCAATTCCTCCCATAAGCAGGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU744967.1:24199899-24199920

TTCGCTATCAAATCTTAAGAGAATTAGATT24199899AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU744967.1:24320051-24320072

TTCGCTATCAAATCTTAAGAGAATTAGATT24320051AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU745005.1:24070607-24070628

TTCGCTATCAAAACTTAAGAGAATTAGATT24070607AGAACGTATTTCAATTCCTCCCATAAGCAGGGTCCTTAAACAGTTGAAAAGC

Malus domestica genome assembly, chromosome: 15.
OU745005.1:24176845-24176866

TTCGCTATCAAATCTTAAGAGAATTAGATT24176845AGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGC

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:29300647-29300668

GCTTTTAAACTGTTTAAGGGCCTTGCTTAT29300647GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:29402956-29402977

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29402956GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:29431899-29431920

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29431899GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:32121615-32121636

GCTTTTCAACTGTTTAAGGACCTTGCTTAT32121615GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:32227855-32227876

GCTTTTCAACTGTTTAAGGACCCTGCTTAT32227855GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGTTTTGATAGCGAA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:28719415-28719436

GCTTTTCAACTGTTTAAGGACCTTGCTTAT28719415GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:28732206-28732227

GCTTTTCAACTGTTTAAGGACCTTGCTTAT28732206GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:29484749-29484770

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29484749GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:29585394-29585415

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29585394GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:29598216-29598237

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29598216GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus x robusta genome assembly, chromosome: 1.
OY720325.1:29026494-29026515

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29026494GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

Malus x robusta genome assembly, chromosome: 1.
OY720325.1:29040367-29040388

GCTTTTCAACTGTTTAAGGACCTTGCTTAT29040367GGGAGGAATTGAAATACGTTCTAATCTAATTCTCTTAAGATTTGATAGCGAA

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Debug Info:

0.009 | 0.009 | search_start;
0.234 | 0.225 | search_plus_done; http://172.18.8.135:50400/match?q=AGAACGTATTTCAATTCCTCCC&k=0&no_gap=0&offset=0&limit=50
0.281 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=GGGAGGAATTGAAATACGTTCT&k=0&no_gap=0&offset=0&limit=30
0.289 | 0.008 | cgi_end;

Summary:

Results:

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