GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 05:03:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:19020666-19020685
GATACTCACTTTATATTAACCACTTTATCG19020666AGAAGACTCGATGGCACTGTTCCGGTTAACATATTATTTTGCACATACCT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:19112385-19112404
GATACTCACTTTATATTAACCACTTTATCG19112385AGAAGACTCGATGGCACTGTTCCGGTTAACATATTATTTTGCACATACCT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:19185614-19185633
GATACTCACTTTATATTAACCACTTTATCG19185614AGAAGACTCGATGGCACTGTTCCGGTTAACATATTATTTTGCACATACCT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:18738927-18738946
GATACTCACTTTATATTAACCACTTTATCG18738927AGAAGACTCGATGGCACTGTTCCGGTTAACATATTATTTTGCACATACCT
PvEST-F-871 Bamboo (Phyllostachys vivax cv. aureocaulis) SSH forward cDNA library Phyllostachys vivax cDNA, mRNA sequence.
JZ894075.1:35-54
TAACATGTGATCCATTGCCAGCGTGTCCAA35ACAGTGCCATCGAGTCTTCTTTCTCTTGCCAGTGGAAGGAAATCAGTTAG
TSA: Pyrus x bretschneideri Unigene553_XinShao mRNA sequence.
JR595972.1:234-253
CTGTATGTTCAAAATAATATGTTAACCGGA234ACAGTGCCATCGAGTCTTCTCGATAAACTGGTTAATATGAACTACGCTGG
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:13215807-13215826
AGGTATGTGCAAAATAATATGTTAACCGGA13215807ACAGTGCCATCGAGTCTTCTCGATAAAGTGGTTAATATGAAGTGAGTATC
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:13320341-13320360
AGGTATGTGCAAAATAATATGTTAACCGGA13320341ACAGTGCCATCGAGTCTTCTCGATAAAGTGATTAATATGAAGTGAGTATC
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:9728204-9728223
AGGTATGTGCAAAATAATATGTTAACCGGA9728204ACAGTGCCATCGAGTCTTCTCGATAAACTGGTTAATATGAAGTGAGTATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAAGACTCGATGGCACTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAGACTCGATGGCACTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAGACTCGATGGCACTGT&k=0&no_gap=0&offset=0&limit=50
0.195 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=ACAGTGCCATCGAGTCTTCT&k=0&no_gap=0&offset=0&limit=46
0.198 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).