GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:21:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Podarcis cretensis genome assembly, chromosome: 6.
OX638154.1:1672795-1672814
CCCTCCTGTGGTTTCCGGCTATATGTATTC1672795AGAAGCACCACTTCCTCCAAATGTGGAGGCAGAGCAGAGCCAACCTGGCT
KS24024G12 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120160.1:578-597
TGTTGTCAAATGGGAATTCCCTGGAAATGG578AGAAGCACCACTTCCTCCAAAAAGGAAACAGCAGATCAGAAGAAGACATT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:254384706-254384725
TGTTGTCAAATGGGAATTCCCTGGAAATGG254384706AGAAGCACCACTTCCTCCAAAAAGGAAACAGCAGATCAGAAGAAGACATT
Sulfurospirillum halorespirans DSM 13726 chromosome, complete genome.
CP017111.1:2596644-2596663
ATCATTCCCATCGCCACCATAAAGGGTATT2596644AGAAGCACCACTTCCTCCAATCATCGTATCATCGCCAACGGTTCCATAGA
Harmonia axyridis genome assembly, chromosome: 4.
OU611930.1:12273676-12273695
GAACTCACCAACCGCATAAAGTTTAGGGAG12273676AGAAGCACCACTTCCTCCAAATACTACAGACGTAATACTTAAATGTCTTG
KS26036F04 KS26 Capsicum annuum cDNA, mRNA sequence.
GD133001.1:204-223
AATGTCTTCTTCTGATCTGCTGTTTCCTTT204TTGGAGGAAGTGGTGCTTCTCCATTTCCAGGGAATTCCCATTTGACAACA
TSA: Capsicum annuum MGMT_Contig5142, mRNA sequence.
JW055386.1:501-520
AATGTCTTCTTCTGATCTGCTGTTTCCTTT501TTGGAGGAAGTGGTGCTTCTCCATTTCCAGGGAATTCCCATTTGACAACA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:1293900-1293919
AATGTCTTCTTCTGATCTGCTGTTTCCTTT1293900TTGGAGGAAGTGGTGCTTCTCCATTTCCAGGGAATTCCCATTTGACAACA
Amedibacterium intestinale JCM 30884 DNA, complete genome.
AP019695.1:1251296-1251315
TTTATGATTAGTACATTCCACCTTGTGGCA1251296TTGGAGGAAGTGGTGCTTCTTTTTCTTTCATAGATGCAACACCTGCTTCA
Amedibacterium intestinale DNA, complete genome.
AP019711.1:1353917-1353936
TTTATGATTAGTACATTCCACCTTGTGGCA1353917TTGGAGGAAGTGGTGCTTCTTTTTCTTTCATAGATGCAACACCTGCTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAAGCACCACTTCCTCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAGCACCACTTCCTCCAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.219 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAGCACCACTTCCTCCAA&k=0&no_gap=0&offset=0&limit=50
0.350 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGAGGAAGTGGTGCTTCT&k=0&no_gap=0&offset=0&limit=45
0.353 | 0.003 | cgi_end;

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