GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:17:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:14576315-14576333
TTCGAAACCCCACACACATAGAGACTGGAG14576315AGAATCGGTGTTGGGGATGAAGTCGTGAGGTGTGGTGATGGCCGGAGCA
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:14405833-14405851
TTCGAAACCCCACACACATAGAGACTGGAG14405833AGAATCGGTGTTGGGGATGAAGTCGTGAGGTGTGGTGATGGCCGGAGCA
Malus domestica genome assembly, chromosome: 15.
OU744967.1:14633315-14633333
TTCGAAACCCCACACACATAGAGACTGGAG14633315AGAATCGGTGTTGGGGATGAAGTCGTGAGGTGTGGTGATGGCCGGAGCA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:52975096-52975114
CTCGCGTTCAAGGCCACAAAGTGGACACGA52975096AGAATCGGTGTTGGGGATGACTCCACACGAGATAAGCTTCATTTTTGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:15367175-15367193
CTCGCATTCAAGGCCACAAAGTGGACACAA15367175AGAATCGGTGTTGGGGATGACTCCACACGAGATAAGCTTCATTTTTGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:3715867-3715885
CTCGCATTCAAGGCCACAAAGTAAACACAA3715867AGAATCGGTGTTGGGGATGAGACCACACGAGATAAGCTTCATTTTTGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:15336630-15336648
CTCGCATTCAAGGCCACAAAGTGGACACAA15336630AGAATCGGTGTTGGGGATGACTCCACACGAGATAAGCTTCATTTTTGTG
Eustoma grandiflorum DNA, chromosome 20, draft genome sequence.
AP025059.1:34315009-34315027
TACATTTTGACCCATGTGGTTTTGGTGAAT34315009CATCCCCAACACCGATTCTAATGGAGGCAGCAAAAGGTAATTTATTGTT
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:38522842-38522860
CGCTCCGGCCACCACCACACCTCACGACTT38522842CATCCCCAACACCGATTCTCTCCAGTCTCTATGTGTGTGGGGTTTCGAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392554.1:10288290-10288308
CACAAAAATGAAGCTTATCTCGTGTGGAGT10288290CATCCCCAACACCGATTCTTTGTGTCCACTTTGTGGCCTTGAATGCGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAATCGGTGTTGGGGATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAATCGGTGTTGGGGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AGAATCGGTGTTGGGGATG&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CATCCCCAACACCGATTCT&k=0&no_gap=0&offset=0&limit=43
0.140 | 0.002 | cgi_end;

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