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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:47:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cervus elaphus genome assembly, chromosome: 25.
OU343102.1:9818420-9818439
TTTTTTTTTTTTTCTTTTTTATGAGGAAGC9818420AGAATCTGCAACCACATTGATCTGTTCAATTCAGAAACTATACGTGTTCC
Rangifer tarandus platyrhyncus genome assembly, chromosome: 14.
OX459950.2:10255028-10255047
AATTTTTTTTTTTCTTTTTTATGAGGAAGC10255028AGAATCTGCAACCACATTGATCTGTTCAATTCAGAAACTATACGTGTTAC
Rangifer tarandus platyrhyncus genome assembly, chromosome: 15.
OX596099.1:8161104-8161123
AATTTTTTTTTTTCTTTTTTATGAGGAAGC8161104AGAATCTGCAACCACATTGATCTGTTCAATTCAGAAACTATACGTGTTAC
Salmo trutta genome assembly, chromosome: 14.
LR584411.1:58665592-58665611
GGTCTTCGCTATTGCTATAATAATCTGTGC58665592AGAATCTGCAACCACATTGATCACTTGCACCATGTACTTTTAATGCAATC
Psittacula echo genome assembly, chromosome: 3.
OY725422.1:99765780-99765799
ACAAGAGTTTATCTTCATGTCTCGAGTTCC99765780AGAATCTGCAACCACATTGACGTAGATCTACAAGTGACGAAAGCACTGCG
GR__Eb0036A18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0036A18 5', mRNA sequence.
CO105729.1:46-65
CTTTATTCATTTGGTTATGTTCAAGCTCTA46AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
GR__Eb024G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb024G17 5', mRNA sequence.
CO120708.1:46-65
CTTTATTCATTTGGTTATGTTCAAGCTCTA46AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
rcrycc0_0001_B09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO106605.1:55-74
CTTTATTCATTTGGTTATGTTCAAGCTCTA55AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
G07_51500.79.S1108194026.LDYN1-2479.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117970.1:55-74
CTTTATTCATTTGGTTATGTTCAAGCTCTA55AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:294523-294542
CTTTATTCATTTGGTTATGTTCAAGCTCTA294523AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:286328-286347
CTTTATTCATTTGGTTATGTTCAAGCTCTA286328AGAATCTGCAACCACATTGATGCCAACTGAACTAGCCACATGACGCACAC
Solanum pennellii chromosome ch04, complete genome.
HG975443.1:37929747-37929766
GGACACACTACCCATACACATTCGATTCAA37929747AGAATCTGCAACCACATTGACATTCCTGGGTGGTAAAGGAAACTTCTATC
Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:657737762-657737781
ATACAAGATCATTTGGGGGGGGGGGTTGTT657737762TCAATGTGGTTGCAGATTCTCGTATTGACTGTAAACCAGCCAGGGAATAT
GH_OVFIB_01-01-10R_A04_InvR_22Jan04_032_F Ovules - day of anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW232062.1:293-312
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA293TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
GH_RTFR_02R_A04_InvR_13Sep04_032_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW233227.1:329-348
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA329TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
GH_TSnorm_01-01-01R_A03_InvR_24Feb04_031_F Stem (norm) - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW243029.1:374-393
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA374TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATA
GH_TMIRS_129_B06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW508924.1:386-405
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA386TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
B03_P-22_026 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX166193.1:433-452
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA433TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
B03_P-22_026 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197104.1:433-452
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA433TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
ZMMBBb0319K08.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0319K08 3', genomic survey sequence.
CG848144.1:479-498
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA479TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
Gossypium hirsutum phospholipase D delta isoform 1a mRNA, complete cds.
AY138252.1:3013-3032
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA3013TCAATGTGGTTGCAGATTCTTAGAGCTTGAACATAACCAAATGAATAAAG
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:107740566-107740585
GTGTGCGTCATGTGGCTAGTTCAGTTGGCA107740566TCAATGTGGTTGCAGATTCTTAGAGCCTGGACATAACCAAATGAATAAAG
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:139285660-139285679
CCCTTGATCATGTGGCTAGTTCAGTTGACA139285660TCAATGTGGTTGCAGATTCTTCGAGCTTGAACATAATCAAATGAATGAAG
Thelaira solivaga genome assembly, chromosome: 1.
OX377610.1:67685317-67685336
GATGGCGCTTTTGACGGACTAGTTATGTTG67685317TCAATGTGGTTGCAGATTCTTCTTTTGGTGTTGTGGGTATGAATTTGTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAATCTGCAACCACATTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAATCTGCAACCACATTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.454 | 0.445 | search_plus_done; http://172.18.8.135:50400/match?q=AGAATCTGCAACCACATTGA&k=0&no_gap=0&offset=0&limit=50
0.931 | 0.477 | search_minus_done; http://172.18.8.135:50400/match?q=TCAATGTGGTTGCAGATTCT&k=0&no_gap=0&offset=0&limit=38
0.939 | 0.008 | cgi_end;

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