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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 18:29:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

RS1GC29TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD939265.1:159-178
CCCGCTACGGCGAAGAAGTCGCCGGTGGTG159AGACAAAAGACCGAGCCTGATTCCTCCTCTCAGGAGCAGCAACAACAACA
Raphanus sativus mRNA, clone: RSCL03C06, 5' end sequence.
FY433891.1:262-281
CCCGCTACGGCGAAGAAGTCGCCGGTGGTG262AGACAAAAGACCGAGCCTGATTCCTCCTCTCAGGAGCAGCAACAACAACA
Raphanus sativus mRNA, clone: RSCL10M12, 5' end sequence.
FY436454.1:302-321
CCCGCTACGGCGAAGAAGTCGCCGGTGGTG302AGACAAAAGACCGAGCCTGATTCCTCCTCTCAGGAGCAGCAACAACAACA
Raphanus sativus mRNA, clone: RSCS03F23, 5' end sequence.
FY447014.1:325-344
CCCGCTACGGCGAAGAAGTCGCCGGTGGTG325AGACAAAAGACCGAGCCTGATTCCTCCTCTCAGGAGCAGCAACAACAACA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_7692.
FX671909.1:261-280
CCCGCTACGGCGAAGAAGTCGCCGGTGGTG261AGACAAAAGACCGAGCCTGATTCCTCCTCTCAGGAGCAGCAACAACAACA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3660.
FX793913.1:1616-1635
TGTTGTTGTTGCTGCTCCTGAGAGGAGGAA1616TCAGGCTCGGTCTTTTGTCTCACCACCGGCGACTTCTTCGCCGTAGCGGG
TSA: Raphanus sativus RS24364 mRNA sequence.
JT808911.1:1642-1661
TGTTGTTGTTGCTGCTCCTGAGAGGAGGAA1642TCAGGCTCGGTCTTTTGTCTCACCACCGGCGACTTCTTCGCCGTAGCGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGACAAAAGACCGAGCCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACAAAAGACCGAGCCTGA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.534 | 0.525 | search_plus_done; http://172.18.8.135:50400/match?q=AGACAAAAGACCGAGCCTGA&k=0&no_gap=0&offset=0&limit=50
0.667 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGGCTCGGTCTTTTGTCT&k=0&no_gap=0&offset=0&limit=45
0.668 | 0.001 | cgi_end;

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