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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:14:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EG-A11_005_E05 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599978.1:42-65
TGGCTAACCAACACGAGATAGAAGCTGTGG42AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
EoEST0255 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-165 5' similar to Unknown protein [Note: similar to Oryza sativa (japonica cultivar-group) clone Os03g0299600, gen
EL563848.1:154-177
TGGCTAACCAACACGAGATAGAAGCTGTGG154AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPMF00546 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 121-G03-T3.seq, mRNA sequence.
EL684309.1:169-192
TGGCTAACCAACACGAGATAGAAGCTGTGG169AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPMF01253 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 133-B04-T3.seq, mRNA sequence.
EL685013.1:163-186
TGGCTAACCAACACGAGATAGAAGCTGTGG163AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPSC00425 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 185-E1-T3.seq, mRNA sequence.
EL688670.1:13-36
TAGAAGCTGTGG13AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
pOP-EO03063_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03063 5', mRNA sequence.
EY410606.1:111-134
TGGCTAACCAACACGAGATAGAAGCTGTGG111AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
EG-M11_007_G07 InfSSHM1, normal male inflorescence Elaeis guineensis cDNA clone EG-M11_007_G07 non-orientated, mRNA sequence.
GT119615.1:183-206
TGGCTAACCAACACGAGATAGAAGCTGTGG183AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
Elaeis guineensis EST, clone (6lib)_isotig32473.
LM627526.1:164-187
TGGCTAACCAACACGAGATAGAAGCTGTGG164AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
TSA: Elaeis guineensis isotig11010.Elguifruit mRNA sequence.
JO098237.1:131-154
TGGCTAACCAACACGAGATAGAAGCTGTGG131AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
Elaeis guineensis large subunit ribosomal protein L17 (RPL17) mRNA, complete cds.
KC146050.1:553-576
TGGCTAACCAACACGAGATAGAAGCTGTGG553AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGACACAGGAAGAGAGCCACAAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACACAGGAAGAGAGCCACAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.591 | 0.582 | search_plus_done; http://172.18.8.135:50400/match?q=AGACACAGGAAGAGAGCCACAAGT&k=0&no_gap=0&offset=0&limit=50
0.624 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTGTGGCTCTCTTCCTGTGTCT&k=0&no_gap=0&offset=0&limit=40
0.624 | 0.000 | cgi_end;

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