GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:05:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_9739.
FX666738.1:894-913
AGAGAGAAGCGTAACTCCAGCCATGGTAGG894AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_12700.
FX697805.1:933-952
AGAGAGAAGCGTAACTCCAGCCATGGTGGG933AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
TSA: Raphanus sativus RS16995 mRNA sequence.
JT801542.1:1414-1433
AGAGAGAAGCGTAACTCCAGCCATGGTAGG1414AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB015N02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189238.2:25522-25541
AGAGAGAAGCGTAACTCCAGCCATGGTGGG25522AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
Brassica rapa subsp. pekinensis clone KBrH081M22, complete sequence.
CU695315.1:82810-82829
AGAGAGAAGCGTAACTCCAGCCATGGTGGG82810AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:5164134-5164153
AGAGAGAAGCGTAACTCCAGCCATGGTGGG5164134AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:30949855-30949874
AGAGAGAAGCGTAACTCCAGCCATGGTAGG30949855AGACAGCTTCAAGACCTTAGACAAGCTGTCCAAAGAAGGACAGAAGTAAC
Arabis alpina genome assembly, chromosome: 8.
LT669795.1:14690931-14690950
AGAGAGAAGCGTGACTCCAGCCATTGTAGG14690931AGACAGCTTCAAGACCTTAGATAAGCTGTCTAAAGAAGGACAGAAGTAAC
Cochlearia excelsa genome assembly, chromosome: 5.
OY748331.1:30849182-30849201
AGACAGAAGCGTGACACCGGCCATCGTAGG30849182AGACAGCTTCAAGACCTTAGATAAGCTGTCCAAAGAAGGACAGAAGTAAC
Limnoperna fortunei genome assembly, chromosome: 4.
OX104114.1:62030342-62030361
TTTCTTTTTTACTATGGTTTTAAAATATTT62030342AGACAGCTTCAAGACCTTAGACATGTTAGATACTTAAAACTTTTAGCATT
Ferdinandea cuprea genome assembly, chromosome: 4.
OY754961.1:43433122-43433141
TCTTTTTGCTCAGAAAGAGCGTTTATCAAA43433122AGACAGCTTCAAGACCTTAGGCAATTGGTCCTTTTCTGATTTTCTTATTG
RR4AO07TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV567587.1:10-29
GCAGCTTGT10CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF38D18, 5'-end sequence.
FY420702.1:424-443
GTTACTTCTGTCCTTCTTTGGACAGCTTGT424CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Raphanus sativus mRNA, clone: RSCL17D18, 5' end sequence.
FY438614.1:375-394
GTTACTTCTGTCCTTCTTTGGACAGCTTGT375CTAAGGTCTTGAAGCTGTCTCCTACCATGGCTGGAGTTACGCTTCTCTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6927.
FX730800.1:427-446
GTTACTTCTGTCCTTCTTTGGACAGCTTGT427CTAAGGTCTTGAAGCTGTCTCCTACCATGGCTGGAGTTACGCTTCTCTCT
Brassica napus GSS, clone JBnB174F09, end read, primer SACL2(forward).
CU968551.1:274-293
GTTACTTCTGTCCTTCTTTGGACAGCTTGT274CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
KBrB044C01R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB044C01, genomic survey sequence.
DX043439.1:269-288
GTTACTTCTGTCCTTCTTTGGACAGCTTGT269CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
KBrB129O23R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB129O23, genomic survey sequence.
ED536901.1:257-276
GTTACTTCTGTCCTTCTTTGGACAGCTTGT257CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Brassica napus genome assembly, chromosome: A10.
HG994364.1:15591357-15591376
GTTACTTCTGTCCTTCTTTGGACAGCTTGT15591357CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Brassica rapa genome, scaffold: A10.
LR031577.1:12500620-12500639
GTTACTTCTGTCCTTCTTTGGACAGCTTGT12500620CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15256955-15256974
GTTACTTCTGTCCTTCTTTGGACAGCTTGT15256955CTAAGGTCTTGAAGCTGTCTCCCACCATGGCTGGAGTTACGCTTCTCTCT
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:2029527-2029546
GTTACTTCTGTCCTTCTTTGGACAGCTTGT2029527CTAAGGTCTTGAAGCTGTCTCCTACCATGGCTGGAGTTACGCTTCTCTCT
Cardamine chenopodiifolia genome assembly, chromosome: 30.
OZ000488.1:12449816-12449835
GTTACTTCTGTCCTTCTTTACACAGCTTAT12449816CTAAGGTCTTGAAGCTGTCTCCTACGATGGCTGGAGTCACGCTTCTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGACAGCTTCAAGACCTTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACAGCTTCAAGACCTTAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.146 | 0.137 | search_plus_done; http://172.18.8.135:50400/match?q=AGACAGCTTCAAGACCTTAG&k=0&no_gap=0&offset=0&limit=50
0.454 | 0.309 | search_minus_done; http://172.18.8.135:50400/match?q=CTAAGGTCTTGAAGCTGTCT&k=0&no_gap=0&offset=0&limit=39
0.462 | 0.008 | cgi_end;

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